Variant report

Variant	rs73420456
Chromosome Location	chr15:45903528-45903529
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45879090..45880889-chr15:45903152..45905270,2	K562	blood:
2	chr15:45749355..45751225-chr15:45902815..45904257,10	K562	blood:
3	chr15:45750278..45751893-chr15:45902815..45904079,5	MCF-7	breast:
4	chr15:45815036..45815573-chr15:45903214..45904130,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259354	Chromatin interaction
ENSG00000104164	Chromatin interaction
ENSG00000260170	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10152775	0.86[AMR][1000 genomes]
rs10152792	0.86[AMR][1000 genomes]
rs13376	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1442797	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1529353	0.86[AMR][1000 genomes]
rs1529354	0.93[AMR][1000 genomes]
rs1559892	0.86[AMR][1000 genomes]
rs16944305	0.93[AMR][1000 genomes]
rs16945588	0.93[AMR][1000 genomes]
rs16945605	0.93[AMR][1000 genomes]
rs1970374	0.86[AMR][1000 genomes]
rs3858908	0.86[AMR][1000 genomes]
rs4598849	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs57263027	0.93[AMR][1000 genomes]
rs60561729	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61169737	0.86[AMR][1000 genomes]
rs61756712	0.86[AMR][1000 genomes]
rs6493153	0.86[AMR][1000 genomes]
rs679569	0.93[AMR][1000 genomes]
rs7163098	0.93[AMR][1000 genomes]
rs7165846	0.86[AMR][1000 genomes]
rs7166434	0.93[AMR][1000 genomes]
rs7168313	0.81[AMR][1000 genomes]
rs7168672	0.86[AMR][1000 genomes]
rs7170941	0.86[AMR][1000 genomes]
rs7173046	0.86[AMR][1000 genomes]
rs7183382	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs719018	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs719019	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73414486	0.86[AMR][1000 genomes]
rs73416403	0.86[AMR][1000 genomes]
rs73416407	0.86[AMR][1000 genomes]
rs73416479	0.86[AMR][1000 genomes]
rs73416487	0.86[AMR][1000 genomes]
rs73420427	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73420437	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73420438	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7342662	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7495403	0.86[AMR][1000 genomes]
rs751819	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8025600	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8027324	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs8029983	0.86[AMR][1000 genomes]
rs8034420	0.86[AMR][1000 genomes]
rs8042179	0.86[AMR][1000 genomes]
rs8042253	0.91[AFR][1000 genomes]
rs8042662	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv904190	chr15:45892672-45960897	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	27 gene(s)	inside rSNPs	n/a
4	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45881000-45908600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:45881000-45908800	Weak transcription	Esophagus	oesophagus
3	chr15:45881200-45909000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:45881800-45904800	Weak transcription	NHEK	skin
5	chr15:45882000-45908600	Weak transcription	NHLF	lung
6	chr15:45888800-45904800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:45889000-45903600	Weak transcription	Thymus	Thymus
8	chr15:45889600-45906600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:45889800-45904800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:45889800-45905400	Weak transcription	Fetal Intestine Small	intestine
11	chr15:45889800-45908800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:45890200-45908800	Weak transcription	A549	lung
13	chr15:45896800-45912400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:45898400-45911000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:45898800-45903600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:45898800-45903600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:45898800-45904600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:45898800-45906600	Weak transcription	Colon Smooth Muscle	Colon
19	chr15:45898800-45906600	Weak transcription	Pancreas	Pancrea
20	chr15:45898800-45909200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr15:45898800-45911600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:45899000-45904800	Weak transcription	NH-A	brain
23	chr15:45899000-45906600	Weak transcription	HepG2	liver
24	chr15:45899400-45904800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr15:45899400-45904800	Weak transcription	HSMM	muscle
26	chr15:45899400-45904800	Weak transcription	NHDF-Ad	bronchial
27	chr15:45899400-45906800	Weak transcription	Brain Hippocampus Middle	brain
28	chr15:45899400-45909000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr15:45899600-45903600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:45899600-45903600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr15:45899600-45903600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:45899600-45904600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr15:45899600-45904800	Weak transcription	HUVEC	blood vessel
34	chr15:45899600-45904800	Weak transcription	Osteobl	bone
35	chr15:45899600-45906600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:45899600-45906800	Weak transcription	Brain Anterior Caudate	brain
37	chr15:45899600-45912400	Weak transcription	HSMMtube	muscle
38	chr15:45899800-45903600	Weak transcription	Ovary	ovary
39	chr15:45899800-45905000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:45899800-45906600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr15:45900000-45903800	Weak transcription	Fetal Thymus	thymus
42	chr15:45900200-45903800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:45900800-45904800	Weak transcription	GM12878-XiMat	blood
44	chr15:45900800-45908800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:45900800-45908800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr15:45900800-45911800	Weak transcription	Primary B cells from cord blood	blood
47	chr15:45901000-45905000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:45901000-45905000	Weak transcription	Hela-S3	cervix
49	chr15:45901000-45909000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr15:45901600-45903800	Weak transcription	Primary monocytes fromperipheralblood	blood

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