Variant report

Variant	rs61756712
Chromosome Location	chr15:45814306-45814307
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:45813492..45816353-chr15:45876550..45880712,4	MCF-7	breast:
2	chr15:45801393..45804941-chr15:45813631..45816253,3	MCF-7	breast:
3	chr15:45813395..45816326-chr15:45879088..45881474,2	MCF-7	breast:
4	chr15:45750656..45751581-chr15:45813573..45814784,3	K562	blood:

Variant related genes	Relation type
ENSG00000260170	Chromatin interaction
ENSG00000104164	Chromatin interaction
ENSG00000179362	Chromatin interaction
ENSG00000259354	Chromatin interaction

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10152775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152792	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288864	0.84[AMR][1000 genomes]
rs13376	0.86[AMR][1000 genomes]
rs1442797	0.86[AMR][1000 genomes]
rs1529353	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529354	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1559892	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16943587	0.84[AMR][1000 genomes]
rs16943691	0.84[AMR][1000 genomes]
rs16944196	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16944305	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945588	0.93[AMR][1000 genomes]
rs16945605	0.93[AMR][1000 genomes]
rs1970374	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412958	0.92[AMR][1000 genomes]
rs2433623	0.84[AMR][1000 genomes]
rs2467880	0.84[AMR][1000 genomes]
rs2486283	0.84[AMR][1000 genomes]
rs3858908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598849	0.86[AMR][1000 genomes]
rs57255527	0.84[AMR][1000 genomes]
rs57263027	0.93[AMR][1000 genomes]
rs57421622	0.84[AMR][1000 genomes]
rs57668312	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58055978	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58078831	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58694071	0.84[AMR][1000 genomes]
rs60561729	0.86[AMR][1000 genomes]
rs61169737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61186343	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61500896	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6493153	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493159	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs679569	0.93[AMR][1000 genomes]
rs7163098	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166434	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168313	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7168672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183382	0.86[AMR][1000 genomes]
rs719018	0.86[AMR][1000 genomes]
rs719019	0.86[AMR][1000 genomes]
rs73410577	0.84[AMR][1000 genomes]
rs73412436	0.84[AMR][1000 genomes]
rs73412437	0.84[AMR][1000 genomes]
rs73412438	0.84[AMR][1000 genomes]
rs73412443	0.84[AMR][1000 genomes]
rs73412445	0.84[AMR][1000 genomes]
rs73412447	0.84[AMR][1000 genomes]
rs73412449	0.84[AMR][1000 genomes]
rs73412452	0.84[AMR][1000 genomes]
rs73412453	0.84[AMR][1000 genomes]
rs73412454	0.84[AMR][1000 genomes]
rs73412456	0.84[AMR][1000 genomes]
rs73412457	0.84[AMR][1000 genomes]
rs73412459	0.84[AMR][1000 genomes]
rs73412460	0.84[AMR][1000 genomes]
rs73412462	0.84[AMR][1000 genomes]
rs73412463	0.84[AMR][1000 genomes]
rs73412467	0.84[AMR][1000 genomes]
rs73412470	0.84[AMR][1000 genomes]
rs73412479	0.92[AMR][1000 genomes]
rs73412484	0.92[AMR][1000 genomes]
rs73412488	0.92[AMR][1000 genomes]
rs73412490	0.92[AMR][1000 genomes]
rs73414454	0.92[AMR][1000 genomes]
rs73414486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416403	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416407	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416479	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416484	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416493	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418308	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418310	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418311	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418314	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418316	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418320	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418387	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418395	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418401	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420403	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420405	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420406	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420408	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420409	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420412	1.00[EUR][1000 genomes]
rs73420415	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420427	0.86[AMR][1000 genomes]
rs73420437	0.86[AMR][1000 genomes]
rs73420438	0.86[AMR][1000 genomes]
rs73420456	0.86[AMR][1000 genomes]
rs7342662	0.86[AMR][1000 genomes]
rs7495403	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs751819	0.86[AMR][1000 genomes]
rs8025600	0.86[AMR][1000 genomes]
rs8027324	0.86[AMR][1000 genomes]
rs8029983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034420	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042179	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042662	0.86[AMR][1000 genomes]
rs9672808	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45812800-45814400	Flanking Active TSS	Brain Anterior Caudate	brain
2	chr15:45813000-45814400	Flanking Active TSS	Fetal Brain Female	brain
3	chr15:45813000-45815400	Active TSS	NHLF	lung
4	chr15:45813200-45814400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr15:45813200-45815800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr15:45813200-45815800	Active TSS	Right Atrium	heart
7	chr15:45813400-45814400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr15:45813400-45814400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
9	chr15:45813400-45814400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr15:45813400-45814600	Flanking Active TSS	Primary B cells from cord blood	blood
11	chr15:45813400-45814600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:45813400-45815200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:45813400-45815600	Active TSS	Right Ventricle	heart
14	chr15:45813400-45815800	Active TSS	NHDF-Ad	bronchial
15	chr15:45813600-45814400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:45813600-45814400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:45813600-45814400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr15:45813600-45814400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr15:45813600-45814400	Flanking Active TSS	Adipose Nuclei	Adipose
20	chr15:45813600-45814400	Flanking Active TSS	Liver	Liver
21	chr15:45813600-45814400	Flanking Active TSS	Fetal Intestine Large	intestine
22	chr15:45813600-45814400	Flanking Active TSS	Fetal Intestine Small	intestine
23	chr15:45813600-45814400	Flanking Active TSS	Fetal Lung	lung
24	chr15:45813600-45814400	Flanking Active TSS	Fetal Muscle Leg	muscle
25	chr15:45813600-45814400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr15:45813600-45814400	Flanking Active TSS	HMEC	breast
27	chr15:45813600-45814400	Flanking Active TSS	HSMM	muscle
28	chr15:45813600-45814600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:45813600-45814600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:45813600-45814600	Flanking Active TSS	HUVEC	blood vessel
31	chr15:45813600-45814600	Flanking Active TSS	NHEK	skin
32	chr15:45813600-45814800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:45813600-45815400	Active TSS	Colonic Mucosa	Colon
34	chr15:45813600-45815400	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr15:45813600-45815400	Active TSS	A549	lung
36	chr15:45813600-45815600	Active TSS	Esophagus	oesophagus
37	chr15:45813600-45815600	Active TSS	Left Ventricle	heart
38	chr15:45813600-45815600	Active TSS	Ovary	ovary
39	chr15:45813600-45815600	Active TSS	Psoas Muscle	Psoas
40	chr15:45813800-45814400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:45813800-45814400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr15:45813800-45814400	Flanking Active TSS	Fetal Thymus	thymus
43	chr15:45813800-45814400	Flanking Active TSS	NH-A	brain
44	chr15:45813800-45814600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr15:45813800-45814600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr15:45813800-45814600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
47	chr15:45813800-45815200	Active TSS	Primary B cells from peripheral blood	blood
48	chr15:45813800-45815200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:45813800-45815200	Active TSS	Duodenum Mucosa	Duodenum
50	chr15:45813800-45815400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links