Variant report

Variant	rs73416487
Chromosome Location	chr15:45828465-45828466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45821890..45824592-chr15:45826974..45829188,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179362	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:106)

rs_ID	r²[population]
rs10152775	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152792	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1288864	0.84[AMR][1000 genomes]
rs13376	0.86[AMR][1000 genomes]
rs1442797	0.86[AMR][1000 genomes]
rs1529353	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1529354	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1559892	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16943587	0.84[AMR][1000 genomes]
rs16943691	0.84[AMR][1000 genomes]
rs16944196	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16944305	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16945588	0.93[AMR][1000 genomes]
rs16945605	0.93[AMR][1000 genomes]
rs1970374	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2412958	0.92[AMR][1000 genomes]
rs2433623	0.84[AMR][1000 genomes]
rs2467880	0.84[AMR][1000 genomes]
rs2486283	0.84[AMR][1000 genomes]
rs3858908	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4598849	0.86[AMR][1000 genomes]
rs57255527	0.84[AMR][1000 genomes]
rs57263027	0.93[AMR][1000 genomes]
rs57421622	0.84[AMR][1000 genomes]
rs57668312	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58055978	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58078831	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs58694071	0.84[AMR][1000 genomes]
rs60561729	0.86[AMR][1000 genomes]
rs61169737	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61186343	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61500896	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61756712	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6493159	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs679569	0.93[AMR][1000 genomes]
rs7163098	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7165846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166434	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7168313	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7168672	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7170941	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7173046	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7183382	0.86[AMR][1000 genomes]
rs719018	0.86[AMR][1000 genomes]
rs719019	0.86[AMR][1000 genomes]
rs73410577	0.84[AMR][1000 genomes]
rs73412436	0.84[AMR][1000 genomes]
rs73412437	0.84[AMR][1000 genomes]
rs73412438	0.84[AMR][1000 genomes]
rs73412443	0.84[AMR][1000 genomes]
rs73412445	0.84[AMR][1000 genomes]
rs73412447	0.84[AMR][1000 genomes]
rs73412449	0.84[AMR][1000 genomes]
rs73412452	0.84[AMR][1000 genomes]
rs73412453	0.84[AMR][1000 genomes]
rs73412454	0.84[AMR][1000 genomes]
rs73412456	0.84[AMR][1000 genomes]
rs73412457	0.84[AMR][1000 genomes]
rs73412459	0.84[AMR][1000 genomes]
rs73412460	0.84[AMR][1000 genomes]
rs73412462	0.84[AMR][1000 genomes]
rs73412463	0.84[AMR][1000 genomes]
rs73412467	0.84[AMR][1000 genomes]
rs73412470	0.84[AMR][1000 genomes]
rs73412479	0.92[AMR][1000 genomes]
rs73412484	0.92[AMR][1000 genomes]
rs73412488	0.92[AMR][1000 genomes]
rs73412490	0.92[AMR][1000 genomes]
rs73414454	0.92[AMR][1000 genomes]
rs73414486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416403	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416407	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73416479	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416484	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73416493	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418308	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418310	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418311	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418314	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418316	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418320	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418387	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418395	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73418401	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420403	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420405	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420406	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420408	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420409	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420412	1.00[EUR][1000 genomes]
rs73420415	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73420427	0.86[AMR][1000 genomes]
rs73420437	0.86[AMR][1000 genomes]
rs73420438	0.86[AMR][1000 genomes]
rs73420456	0.86[AMR][1000 genomes]
rs7342662	0.86[AMR][1000 genomes]
rs7495403	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs751819	0.86[AMR][1000 genomes]
rs8025600	0.86[AMR][1000 genomes]
rs8027324	0.86[AMR][1000 genomes]
rs8029983	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8034420	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8042179	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042662	0.86[AMR][1000 genomes]
rs9672808	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv1045556	chr15:45777396-45884854	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv904188	chr15:45801035-45941689	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
4	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45826600-45828600	Enhancers	Brain Hippocampus Middle	brain
2	chr15:45826600-45828600	Enhancers	Brain Substantia Nigra	brain
3	chr15:45826800-45828600	Enhancers	Brain Cingulate Gyrus	brain
4	chr15:45827800-45828600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr15:45827800-45831600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr15:45828000-45831600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:45828400-45829200	Weak transcription	Fetal Intestine Small	intestine

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