Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs2146822	1.00[ASN][1000 genomes]
rs2226077	1.00[ASN][1000 genomes]
rs2226078	1.00[ASN][1000 genomes]
rs4417425	1.00[ASN][1000 genomes]
rs59149020	1.00[ASN][1000 genomes]
rs61707735	1.00[ASN][1000 genomes]
rs61965606	1.00[ASN][1000 genomes]
rs6492722	1.00[ASN][1000 genomes]
rs6492724	1.00[ASN][1000 genomes]
rs72638354	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638356	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7318105	1.00[ASN][1000 genomes]
rs7320230	1.00[ASN][1000 genomes]
rs7329965	1.00[ASN][1000 genomes]
rs73546690	1.00[ASN][1000 genomes]
rs7981150	1.00[ASN][1000 genomes]
rs7984105	1.00[ASN][1000 genomes]
rs7985331	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs7989918	1.00[ASN][1000 genomes]
rs7998457	1.00[ASN][1000 genomes]
rs9516431	1.00[ASN][1000 genomes]
rs9516439	1.00[ASN][1000 genomes]
rs9524564	1.00[ASN][1000 genomes]
rs9524575	1.00[ASN][1000 genomes]
rs9524577	1.00[ASN][1000 genomes]
rs9584241	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584242	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584243	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590045	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590046	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9590048	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95264200-95299600	Weak transcription	Psoas Muscle	Psoas
2	chr13:95294600-95308600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr13:95294600-95309600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search: