Variant report

Variant	rs73546690
Chromosome Location	chr13:95266063-95266064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:95258888..95261830-chr13:95264596..95266562,2	K562	blood:
2	chr13:95246300..95249639-chr13:95263830..95266634,3	MCF-7	breast:
3	chr13:95087859..95090197-chr13:95264483..95266711,2	MCF-7	breast:
4	chr13:95258888..95260648-chr13:95263620..95266096,2	K562	blood:

Variant related genes	Relation type
ENSG00000088451	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16949977	1.00[ASN][1000 genomes]
rs2146822	1.00[ASN][1000 genomes]
rs2226077	1.00[ASN][1000 genomes]
rs2226078	1.00[ASN][1000 genomes]
rs4417425	1.00[ASN][1000 genomes]
rs59149020	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59644148	0.87[AFR][1000 genomes]
rs60975003	0.85[AFR][1000 genomes]
rs61707735	1.00[ASN][1000 genomes]
rs61965606	1.00[ASN][1000 genomes]
rs6492722	1.00[ASN][1000 genomes]
rs6492724	1.00[ASN][1000 genomes]
rs72638354	1.00[ASN][1000 genomes]
rs72638356	1.00[ASN][1000 genomes]
rs7318105	1.00[ASN][1000 genomes]
rs7320230	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329965	1.00[ASN][1000 genomes]
rs73546623	0.85[AFR][1000 genomes]
rs7981150	1.00[ASN][1000 genomes]
rs7984105	1.00[ASN][1000 genomes]
rs7989918	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998457	1.00[ASN][1000 genomes]
rs9516431	1.00[ASN][1000 genomes]
rs9516439	1.00[ASN][1000 genomes]
rs9524564	1.00[ASN][1000 genomes]
rs9524575	1.00[ASN][1000 genomes]
rs9524577	1.00[ASN][1000 genomes]
rs9584241	1.00[ASN][1000 genomes]
rs9584242	1.00[ASN][1000 genomes]
rs9584243	1.00[ASN][1000 genomes]
rs9590045	1.00[ASN][1000 genomes]
rs9590046	1.00[ASN][1000 genomes]
rs9590048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95254600-95276600	Weak transcription	Small Intestine	intestine
2	chr13:95254600-95284000	Weak transcription	Spleen	Spleen
3	chr13:95254800-95268200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr13:95254800-95272000	Weak transcription	Lung	lung
5	chr13:95254800-95275400	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr13:95254800-95275600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr13:95254800-95288800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:95255000-95275400	Weak transcription	Aorta	Aorta
9	chr13:95255000-95275600	Weak transcription	Right Ventricle	heart
10	chr13:95255000-95276200	Weak transcription	HSMMtube	muscle
11	chr13:95255000-95281000	Weak transcription	Colonic Mucosa	Colon
12	chr13:95255200-95272200	Weak transcription	Colon Smooth Muscle	Colon
13	chr13:95255200-95276200	Weak transcription	Fetal Brain Female	brain
14	chr13:95255200-95278200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:95255200-95282200	Weak transcription	Brain Angular Gyrus	brain
16	chr13:95255400-95288600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr13:95255600-95268000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr13:95255600-95281800	Weak transcription	Fetal Brain Male	brain
19	chr13:95255600-95282600	Weak transcription	Fetal Heart	heart
20	chr13:95255800-95268000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr13:95255800-95278000	Weak transcription	Hela-S3	cervix
22	chr13:95255800-95284000	Weak transcription	K562	blood
23	chr13:95255800-95285000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr13:95256600-95272000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr13:95257400-95267600	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr13:95257400-95267800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr13:95257400-95268600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr13:95257400-95269000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr13:95257600-95267600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr13:95257600-95267800	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr13:95257600-95268600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr13:95257600-95268600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr13:95258000-95267200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr13:95258000-95267600	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr13:95259000-95275400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr13:95259600-95275400	Weak transcription	Primary B cells from cord blood	blood
37	chr13:95259600-95275400	Weak transcription	Brain Hippocampus Middle	brain
38	chr13:95259800-95266200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr13:95259800-95268600	Strong transcription	Dnd41	blood
40	chr13:95259800-95269000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr13:95259800-95275800	Weak transcription	Gastric	stomach
42	chr13:95259800-95276000	Weak transcription	Placenta Amnion	Placenta Amnion
43	chr13:95259800-95282000	Weak transcription	Brain Germinal Matrix	brain
44	chr13:95260000-95270400	Weak transcription	HMEC	breast
45	chr13:95260000-95285800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:95260600-95268000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr13:95260600-95269000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr13:95261200-95272000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr13:95261600-95267400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr13:95261600-95267600	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links