Variant report
| Variant | rs9590045 |
|---|---|
| Chromosome Location | chr13:95300657-95300658 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:95298950..95301241-chr13:95362828..95364625,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000125285 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs16949977 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2146822 | 1.00[ASN][1000 genomes] |
| rs2226077 | 1.00[ASN][1000 genomes] |
| rs2226078 | 1.00[ASN][1000 genomes] |
| rs4417425 | 1.00[ASN][1000 genomes] |
| rs59149020 | 1.00[ASN][1000 genomes] |
| rs61707735 | 1.00[ASN][1000 genomes] |
| rs61965606 | 1.00[ASN][1000 genomes] |
| rs6492722 | 1.00[ASN][1000 genomes] |
| rs6492724 | 1.00[ASN][1000 genomes] |
| rs72638354 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72638356 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7318105 | 1.00[ASN][1000 genomes] |
| rs7320230 | 1.00[ASN][1000 genomes] |
| rs7329965 | 1.00[ASN][1000 genomes] |
| rs73546690 | 1.00[ASN][1000 genomes] |
| rs7981150 | 1.00[ASN][1000 genomes] |
| rs7984105 | 1.00[ASN][1000 genomes] |
| rs7989918 | 1.00[ASN][1000 genomes] |
| rs7998457 | 1.00[ASN][1000 genomes] |
| rs9516431 | 1.00[ASN][1000 genomes] |
| rs9516439 | 1.00[ASN][1000 genomes] |
| rs9524564 | 1.00[ASN][1000 genomes] |
| rs9524575 | 1.00[ASN][1000 genomes] |
| rs9524577 | 1.00[ASN][1000 genomes] |
| rs9584241 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9584242 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9584243 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9590046 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9590048 | 0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv34004 | chr13:94906537-95392644 | Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 2 | nsv832686 | chr13:95206742-95400992 | Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:95294600-95308600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr13:95294600-95309600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
