Variant report

Variant	rs9516431
Chromosome Location	chr13:95208924-95208925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95201617..95204136-chr13:95207958..95210665,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs16949977	1.00[ASN][1000 genomes]
rs2146822	1.00[ASN][1000 genomes]
rs2226077	1.00[ASN][1000 genomes]
rs2226078	1.00[ASN][1000 genomes]
rs4417425	1.00[ASN][1000 genomes]
rs59149020	1.00[ASN][1000 genomes]
rs61707735	1.00[ASN][1000 genomes]
rs61965606	1.00[ASN][1000 genomes]
rs6492722	1.00[ASN][1000 genomes]
rs6492724	1.00[ASN][1000 genomes]
rs72638354	1.00[ASN][1000 genomes]
rs72638356	1.00[ASN][1000 genomes]
rs7318105	1.00[ASN][1000 genomes]
rs7320230	1.00[ASN][1000 genomes]
rs7329965	1.00[ASN][1000 genomes]
rs73546690	1.00[ASN][1000 genomes]
rs7981150	1.00[ASN][1000 genomes]
rs7984105	1.00[ASN][1000 genomes]
rs7989918	1.00[ASN][1000 genomes]
rs7998457	1.00[ASN][1000 genomes]
rs9516439	1.00[ASN][1000 genomes]
rs9524564	1.00[ASN][1000 genomes]
rs9524575	1.00[ASN][1000 genomes]
rs9524577	1.00[ASN][1000 genomes]
rs9584241	1.00[ASN][1000 genomes]
rs9584242	1.00[ASN][1000 genomes]
rs9584243	1.00[ASN][1000 genomes]
rs9590045	1.00[ASN][1000 genomes]
rs9590046	1.00[ASN][1000 genomes]
rs9590048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv562756	chr13:95178317-95238154	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv832685	chr13:95179676-95279966	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95202600-95221400	Weak transcription	Gastric	stomach
2	chr13:95202800-95210400	Weak transcription	Thymus	Thymus
3	chr13:95202800-95221400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr13:95202800-95222000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:95202800-95223600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr13:95203000-95221200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr13:95203000-95221400	Weak transcription	Fetal Intestine Small	intestine
8	chr13:95203000-95222400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr13:95203200-95220800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr13:95203200-95220800	Weak transcription	Fetal Intestine Large	intestine
11	chr13:95203200-95222200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr13:95203400-95222400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr13:95203400-95222600	Weak transcription	A549	lung
14	chr13:95204800-95214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:95205200-95211200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr13:95207600-95210600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr13:95208000-95210200	Enhancers	Adipose Nuclei	Adipose
18	chr13:95208400-95211200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:95208600-95209400	Enhancers	HepG2	liver
20	chr13:95208800-95209200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:95208800-95209200	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr13:95208800-95209400	Enhancers	Fetal Stomach	stomach

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