Variant report

Variant	rs7981150
Chromosome Location	chr13:95288336-95288337
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95281545..95283175-chr13:95286843..95288996,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs16949977	1.00[ASN][1000 genomes]
rs2146822	1.00[ASN][1000 genomes]
rs2226077	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2226078	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417425	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4516070	0.81[EUR][1000 genomes]
rs59149020	1.00[ASN][1000 genomes]
rs61707735	1.00[ASN][1000 genomes]
rs61965606	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492722	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492724	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72638354	1.00[ASN][1000 genomes]
rs72638356	1.00[ASN][1000 genomes]
rs7318105	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7320230	1.00[ASN][1000 genomes]
rs7329965	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7329985	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs73546690	1.00[ASN][1000 genomes]
rs7984105	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989918	1.00[ASN][1000 genomes]
rs7998457	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9516431	1.00[ASN][1000 genomes]
rs9516439	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9524564	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524575	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9524577	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9584241	1.00[ASN][1000 genomes]
rs9584242	1.00[ASN][1000 genomes]
rs9584243	1.00[ASN][1000 genomes]
rs9590045	1.00[ASN][1000 genomes]
rs9590046	1.00[ASN][1000 genomes]
rs9590048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7981150	GPR180	cis	Muscle Skeletal	GTEx

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95254800-95288800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:95255400-95288600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr13:95264200-95299600	Weak transcription	Psoas Muscle	Psoas
4	chr13:95264600-95289200	Weak transcription	Esophagus	oesophagus
5	chr13:95264600-95289600	Weak transcription	Fetal Kidney	kidney
6	chr13:95265600-95293400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:95275800-95288800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr13:95276600-95292800	Weak transcription	Colon Smooth Muscle	Colon
9	chr13:95276600-95293600	Weak transcription	HSMMtube	muscle
10	chr13:95276800-95288600	Weak transcription	Primary T cells from cord blood	blood
11	chr13:95276800-95288800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr13:95276800-95289000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:95276800-95292400	Weak transcription	NHEK	skin
14	chr13:95276800-95292800	Weak transcription	NHLF	lung
15	chr13:95276800-95294000	Weak transcription	Stomach Smooth Muscle	stomach
16	chr13:95277000-95289200	Weak transcription	Brain Hippocampus Middle	brain
17	chr13:95277200-95291200	Weak transcription	Primary B cells from cord blood	blood
18	chr13:95277200-95293000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr13:95277400-95289800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:95277400-95293400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr13:95277400-95293800	Weak transcription	Ovary	ovary
22	chr13:95277800-95293200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr13:95278800-95289200	Weak transcription	Fetal Intestine Large	intestine
24	chr13:95279600-95289200	Weak transcription	Brain Anterior Caudate	brain
25	chr13:95279800-95289000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr13:95280600-95293000	Weak transcription	HUVEC	blood vessel
27	chr13:95280600-95293600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr13:95282200-95289000	Weak transcription	Primary monocytes fromperipheralblood	blood
29	chr13:95282400-95292800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr13:95282800-95293400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr13:95283000-95289200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr13:95283000-95292800	Weak transcription	NH-A	brain
33	chr13:95283200-95292400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr13:95283400-95289000	Weak transcription	Brain Angular Gyrus	brain
35	chr13:95283400-95289200	Weak transcription	Dnd41	blood
36	chr13:95283400-95289400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr13:95283400-95293200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr13:95283400-95293600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr13:95283400-95293600	Weak transcription	Fetal Muscle Leg	muscle
40	chr13:95283400-95293800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr13:95283600-95288400	Weak transcription	Aorta	Aorta
42	chr13:95283600-95289200	Weak transcription	Left Ventricle	heart
43	chr13:95283600-95289400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:95283600-95289400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr13:95283600-95292800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr13:95283600-95293200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr13:95283800-95289400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr13:95284400-95293200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr13:95285000-95293000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr13:95285200-95292800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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