Variant report

Variant	rs16951915
Chromosome Location	chr16:80015888-80015889
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13331319	1.00[AMR][1000 genomes]
rs13331402	1.00[AMR][1000 genomes]
rs13334263	1.00[AMR][1000 genomes]
rs13334783	1.00[AMR][1000 genomes]
rs13337419	1.00[AMR][1000 genomes]
rs13338772	1.00[AMR][1000 genomes]
rs16952276	1.00[AMR][1000 genomes]
rs16952334	1.00[AMR][1000 genomes]
rs16952358	1.00[AMR][1000 genomes]
rs16952411	1.00[AMR][1000 genomes]
rs28360791	1.00[AMR][1000 genomes]
rs28421400	1.00[AMR][1000 genomes]
rs60282069	1.00[AMR][1000 genomes]
rs7188448	1.00[AMR][1000 genomes]
rs73576025	1.00[AMR][1000 genomes]
rs73578070	1.00[AMR][1000 genomes]
rs9930150	1.00[AMR][1000 genomes]
rs9936120	1.00[AMR][1000 genomes]
rs9938876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3360836	chr16:80013751-80018049	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80013200-80016200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:80013800-80016600	Enhancers	Brain Substantia Nigra	brain
3	chr16:80014200-80016400	Enhancers	Brain Hippocampus Middle	brain
4	chr16:80014400-80016200	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr16:80014400-80016400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:80014400-80017000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr16:80014600-80016400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr16:80014600-80016400	Enhancers	Brain Anterior Caudate	brain
9	chr16:80014600-80016600	Enhancers	Brain Cingulate Gyrus	brain
10	chr16:80015000-80016200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:80015000-80016600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:80015200-80016400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr16:80015400-80016000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr16:80015400-80020000	Weak transcription	HMEC	breast
15	chr16:80015600-80016200	Enhancers	Brain Angular Gyrus	brain
16	chr16:80015800-80016800	Enhancers	Fetal Brain Female	brain
17	chr16:80015800-80017000	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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