Variant report

Variant	rs9936120
Chromosome Location	chr16:80062549-80062550
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:80061252..80063823-chr16:80117741..80119543,2	MCF-7	breast:
2	chr16:80040089..80044174-chr16:80060281..80063913,4	MCF-7	breast:
3	chr16:80059154..80062850-chr16:80065920..80069891,5	MCF-7	breast:
4	chr16:80061308..80063020-chr16:80110372..80112564,2	MCF-7	breast:
5	chr16:80052898..80058811-chr16:80059069..80065197,11	MCF-7	breast:
6	chr16:80040033..80042042-chr16:80061174..80063546,2	K562	blood:
7	chr16:80061244..80063092-chr16:80096922..80099593,2	MCF-7	breast:
8	chr16:80061826..80063381-chr16:80077866..80079603,2	MCF-7	breast:
9	chr16:80012173..80015037-chr16:80061330..80063455,2	K562	blood:
10	chr16:80051481..80054356-chr16:80061136..80062736,2	K562	blood:
11	chr16:80060384..80062821-chr16:80069228..80071837,2	MCF-7	breast:

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13331319	1.00[AMR][1000 genomes]
rs13331402	1.00[AMR][1000 genomes]
rs13332529	1.00[AMR][1000 genomes]
rs13334263	1.00[AMR][1000 genomes]
rs13334783	1.00[AMR][1000 genomes]
rs13337419	1.00[AMR][1000 genomes]
rs13338772	1.00[AMR][1000 genomes]
rs16951915	1.00[AMR][1000 genomes]
rs16952276	1.00[AMR][1000 genomes]
rs16952334	1.00[AMR][1000 genomes]
rs16952358	1.00[AMR][1000 genomes]
rs16952411	1.00[AMR][1000 genomes]
rs16952468	1.00[AMR][1000 genomes]
rs16952535	1.00[AMR][1000 genomes]
rs28360791	1.00[AMR][1000 genomes]
rs28421400	1.00[AMR][1000 genomes]
rs60282069	1.00[AMR][1000 genomes]
rs73578070	1.00[AMR][1000 genomes]
rs9930150	1.00[AMR][1000 genomes]
rs9938876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80060400-80063600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:80060400-80064600	Enhancers	HMEC	breast
3	chr16:80060800-80063400	Enhancers	Fetal Stomach	stomach
4	chr16:80061400-80062800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr16:80061400-80068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:80061600-80063200	Enhancers	Placenta Amnion	Placenta Amnion
7	chr16:80061600-80064000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr16:80061600-80064000	Enhancers	K562	blood
9	chr16:80061600-80064600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:80061600-80065200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr16:80061800-80063200	Weak transcription	Fetal Intestine Large	intestine
12	chr16:80061800-80063400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr16:80061800-80063400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr16:80062000-80062600	Weak transcription	Fetal Intestine Small	intestine
15	chr16:80062000-80062600	Enhancers	A549	lung
16	chr16:80062000-80063800	Weak transcription	Fetal Thymus	thymus
17	chr16:80062000-80064600	Enhancers	NHEK	skin
18	chr16:80062000-80068000	Weak transcription	HSMM	muscle
19	chr16:80062000-80069800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr16:80062000-80075000	Weak transcription	NH-A	brain
21	chr16:80062400-80062800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr16:80062400-80062800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr16:80062400-80062800	Weak transcription	Esophagus	oesophagus
24	chr16:80062400-80063600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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