Variant report

Variant	rs16952535
Chromosome Location	chr16:80184426-80184427
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13331319	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331402	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332529	1.00[AMR][1000 genomes]
rs13334263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13334783	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337419	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338772	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952276	1.00[AMR][1000 genomes]
rs16952334	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952411	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952468	1.00[AMR][1000 genomes]
rs16952580	1.00[AMR][1000 genomes]
rs28360791	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421400	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60282069	1.00[AMR][1000 genomes]
rs73579630	1.00[AMR][1000 genomes]
rs8051437	1.00[AMR][1000 genomes]
rs9930150	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9936120	1.00[AMR][1000 genomes]
rs9938876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1055982	chr16:80151604-80202923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80181000-80185200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr16:80181200-80184600	Weak transcription	NH-A	brain
3	chr16:80183600-80186600	Enhancers	Ovary	ovary
4	chr16:80183800-80186600	Enhancers	Fetal Muscle Leg	muscle
5	chr16:80184000-80186600	Enhancers	Osteobl	bone
6	chr16:80184200-80185200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr16:80184200-80186600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr16:80184200-80186600	Enhancers	HSMMtube	muscle
9	chr16:80184200-80186600	Enhancers	NHDF-Ad	bronchial
10	chr16:80184400-80184600	Enhancers	HSMM	muscle
11	chr16:80184400-80186600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr16:80184400-80186600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr16:80184400-80186600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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