Variant report
| Variant | rs60282069 |
|---|---|
| Chromosome Location | chr16:80109035-80109036 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:80101158..80103765-chr16:80107510..80109692,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs13331319 | 1.00[AMR][1000 genomes] |
| rs13331402 | 1.00[AMR][1000 genomes] |
| rs13332529 | 1.00[AMR][1000 genomes] |
| rs13334263 | 1.00[AMR][1000 genomes] |
| rs13334783 | 1.00[AMR][1000 genomes] |
| rs13337419 | 1.00[AMR][1000 genomes] |
| rs13338772 | 1.00[AMR][1000 genomes] |
| rs16951915 | 1.00[AMR][1000 genomes] |
| rs16952276 | 1.00[AMR][1000 genomes] |
| rs16952334 | 1.00[AMR][1000 genomes] |
| rs16952358 | 1.00[AMR][1000 genomes] |
| rs16952411 | 1.00[AMR][1000 genomes] |
| rs16952468 | 1.00[AMR][1000 genomes] |
| rs16952535 | 1.00[AMR][1000 genomes] |
| rs16952580 | 1.00[AMR][1000 genomes] |
| rs28360791 | 1.00[AMR][1000 genomes] |
| rs28421400 | 1.00[AMR][1000 genomes] |
| rs8051437 | 1.00[AMR][1000 genomes] |
| rs9930150 | 1.00[AMR][1000 genomes] |
| rs9930972 | 0.85[AFR][1000 genomes] |
| rs9936120 | 1.00[AMR][1000 genomes] |
| rs9938876 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv573285 | chr16:79158182-80127326 | Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv573294 | chr16:80005642-80131944 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv906995 | chr16:80094975-80166677 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:80108800-80109200 | Enhancers | Pancreas | Pancrea |
| 2 | chr16:80108800-80118000 | Weak transcription | Fetal Stomach | stomach |
