Variant report

Variant	rs16952358
Chromosome Location	chr16:80140850-80140851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13331319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332529	1.00[AMR][1000 genomes]
rs13334263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13334783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337419	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16951915	1.00[AMR][1000 genomes]
rs16952276	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952411	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952468	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952535	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952580	1.00[AMR][1000 genomes]
rs28360791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60282069	1.00[AMR][1000 genomes]
rs8051437	1.00[AMR][1000 genomes]
rs9930150	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9936120	1.00[AMR][1000 genomes]
rs9938876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80137400-80143000	Enhancers	HMEC	breast
2	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:80139200-80141800	Weak transcription	HSMM	muscle
4	chr16:80139600-80142000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr16:80139600-80142000	Weak transcription	NH-A	brain
6	chr16:80139600-80142000	Weak transcription	Osteobl	bone
7	chr16:80140000-80141400	Weak transcription	NHEK	skin
8	chr16:80140200-80151200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:80140600-80142000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:80140600-80143200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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