Variant report

Variant	rs9930150
Chromosome Location	chr16:80118736-80118737
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80116624..80119575-chr16:80356454..80358256,2	MCF-7	breast:
2	chr16:80112188..80115143-chr16:80115792..80118787,2	K562	blood:
3	chr16:80057651..80058466-chr16:80118533..80119366,4	MCF-7	breast:
4	chr16:80058579..80060805-chr16:80116598..80118912,2	MCF-7	breast:
5	chr16:80030381..80031931-chr16:80117976..80119153,11	MCF-7	breast:
6	chr16:79791124..79791741-chr16:80118276..80118866,2	MCF-7	breast:
7	chr16:80057651..80058518-chr16:80118488..80119366,5	MCF-7	breast:
8	chr16:80061252..80063823-chr16:80117741..80119543,2	MCF-7	breast:
9	chr16:80118484..80119338-chr16:80499839..80500773,2	MCF-7	breast:
10	chr16:79666242..79666830-chr16:80118596..80119353,2	MCF-7	breast:
11	chr16:80048057..80048870-chr16:80118180..80118757,4	MCF-7	breast:
12	chr16:79801497..79802215-chr16:80118580..80119199,3	MCF-7	breast:
13	chr16:79780426..79781260-chr16:80118290..80119045,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13331319	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331402	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332529	1.00[AMR][1000 genomes]
rs13334263	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13334783	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337419	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338772	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16951915	1.00[AMR][1000 genomes]
rs16952276	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952334	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952358	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952411	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952468	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952535	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952580	1.00[AMR][1000 genomes]
rs28360791	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421400	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60282069	1.00[AMR][1000 genomes]
rs8051437	1.00[AMR][1000 genomes]
rs9936120	1.00[AMR][1000 genomes]
rs9938876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80117800-80119000	Enhancers	Fetal Lung	lung
2	chr16:80118000-80118800	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr16:80118000-80118800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr16:80118000-80119000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr16:80118200-80118800	Enhancers	A549	lung
6	chr16:80118400-80119000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr16:80118400-80119800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:80118400-80119800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr16:80118600-80119000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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