Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:80138093..80140462-chr16:80142206..80144298,2	MCF-7	breast:
2	chr16:80141826..80144611-chr16:80145163..80147859,2	K562	blood:
3	chr16:80139089..80140824-chr16:80141061..80144366,3	MCF-7	breast:
4	chr16:80142621..80144359-chr16:80146389..80148832,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13331319	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13331402	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13332529	1.00[AMR][1000 genomes]
rs13334263	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13337419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13338772	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16951915	1.00[AMR][1000 genomes]
rs16952276	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952334	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952358	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952468	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952535	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952580	1.00[AMR][1000 genomes]
rs28360791	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421400	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60282069	1.00[AMR][1000 genomes]
rs8051437	1.00[AMR][1000 genomes]
rs9930150	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9936120	1.00[AMR][1000 genomes]
rs9938876	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906995	chr16:80094975-80166677	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv833298	chr16:80122337-80314603	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80138000-80156000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:80140200-80151200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr16:80142600-80145800	Weak transcription	NHEK	skin
4	chr16:80143000-80148000	Weak transcription	HMEC	breast
5	chr16:80143400-80151000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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