Variant report

Variant	rs17054907
Chromosome Location	chr13:37685243-37685244
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10507445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054900	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56905051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57149532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57266283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57806247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59237869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60677413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60888296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61559782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139475	1.00[EUR][1000 genomes]
rs7319636	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336363	1.00[CEU][hapmap]
rs73533929	1.00[EUR][1000 genomes]
rs73547839	1.00[EUR][1000 genomes]
rs7985176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994265	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996156	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997086	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37683800-37701400	Weak transcription	Gastric	stomach
2	chr13:37684000-37686800	Weak transcription	Colon Smooth Muscle	Colon
3	chr13:37684200-37690200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr13:37685200-37692400	Weak transcription	Fetal Lung	lung

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