Variant report

Variant	rs17054982
Chromosome Location	chr13:37710044-37710045
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10507445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054900	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56905051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57149532	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57266283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57806247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59237869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60677413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60888296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61559782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563512	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139475	1.00[EUR][1000 genomes]
rs7319636	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336363	1.00[CEU][hapmap]
rs73533929	1.00[EUR][1000 genomes]
rs73547839	1.00[EUR][1000 genomes]
rs7985176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994265	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996156	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997086	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999228	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	esv2526295	chr13:37709754-37711280	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37707200-37711400	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr13:37707600-37710200	Enhancers	Hela-S3	cervix
3	chr13:37707800-37710800	Enhancers	NH-A	brain
4	chr13:37708000-37710400	Enhancers	Osteobl	bone
5	chr13:37708200-37710800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr13:37708200-37714200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:37708400-37710200	Enhancers	Adipose Nuclei	Adipose
8	chr13:37708400-37714400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr13:37708800-37710600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr13:37709000-37710400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr13:37709200-37718200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:37709400-37711400	Enhancers	HUVEC	blood vessel
13	chr13:37709400-37712200	Weak transcription	NHLF	lung
14	chr13:37709600-37712200	Weak transcription	Fetal Intestine Large	intestine
15	chr13:37709800-37710800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr13:37710000-37714000	Enhancers	NHDF-Ad	bronchial

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