Variant report

Variant	rs17054978
Chromosome Location	chr13:37707875-37707876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10507445	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054900	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56905051	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57149532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57266283	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57806247	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59237869	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60677413	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60888296	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61559782	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139475	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7319636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330313	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330518	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336363	1.00[CEU][hapmap]
rs73533929	1.00[EUR][1000 genomes]
rs73547839	1.00[EUR][1000 genomes]
rs7985176	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996730	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37701800-37709200	Weak transcription	Fetal Kidney	kidney
2	chr13:37702400-37708200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr13:37702800-37708000	Weak transcription	Osteobl	bone
4	chr13:37703600-37708400	Weak transcription	Fetal Lung	lung
5	chr13:37704400-37708600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr13:37704800-37708600	Enhancers	HUVEC	blood vessel
7	chr13:37705200-37708400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:37705400-37708000	Weak transcription	Colon Smooth Muscle	Colon
9	chr13:37707200-37711400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr13:37707600-37708200	Enhancers	Fetal Intestine Large	intestine
11	chr13:37707600-37710200	Enhancers	Hela-S3	cervix
12	chr13:37707800-37708000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr13:37707800-37710800	Enhancers	NH-A	brain

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