Variant report

Variant	rs7319636
Chromosome Location	chr13:37703101-37703102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10507445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054900	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054907	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054978	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054982	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56905051	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57149532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57266283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57806247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59237869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60677413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60888296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61559782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563512	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139475	1.00[EUR][1000 genomes]
rs7325430	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330518	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7336363	1.00[CEU][hapmap]
rs73533929	1.00[EUR][1000 genomes]
rs73547839	1.00[EUR][1000 genomes]
rs7985176	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37700600-37704000	Enhancers	Brain Angular Gyrus	brain
2	chr13:37701000-37707200	Strong transcription	Primary neutrophils fromperipheralblood	blood
3	chr13:37701200-37703400	Enhancers	Rectal Smooth Muscle	rectum
4	chr13:37701800-37703600	Enhancers	Fetal Lung	lung
5	chr13:37701800-37709200	Weak transcription	Fetal Kidney	kidney
6	chr13:37702200-37704200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr13:37702200-37707600	Weak transcription	Hela-S3	cervix
8	chr13:37702400-37703600	Weak transcription	Brain Anterior Caudate	brain
9	chr13:37702400-37703600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr13:37702400-37708200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr13:37702600-37704000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:37702600-37704000	Enhancers	Right Atrium	heart
13	chr13:37702800-37703800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr13:37702800-37703800	Weak transcription	Aorta	Aorta
15	chr13:37702800-37703800	Weak transcription	Colon Smooth Muscle	Colon
16	chr13:37702800-37704400	Enhancers	HUVEC	blood vessel
17	chr13:37702800-37707800	Weak transcription	NH-A	brain
18	chr13:37702800-37708000	Weak transcription	Osteobl	bone
19	chr13:37703000-37703200	Enhancers	Stomach Smooth Muscle	stomach
20	chr13:37703000-37703400	Weak transcription	Brain Hippocampus Middle	brain
21	chr13:37703000-37703400	Weak transcription	Brain Substantia Nigra	brain

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