Variant report

Variant	rs59237869
Chromosome Location	chr13:37717592-37717593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:37703579..37706141-chr13:37717526..37719310,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EXOSC8-4	chr13:37717080-37721033	NONHSAT033243
2	lnc-CSNK1A1L-1	chr13:37717104-37720855	NONHSAT033244

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10507445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054978	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17054986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56905051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57149532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57266283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57806247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60677413	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60888296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61559782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6563512	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7139475	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7319636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7325430	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7330518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533929	1.00[EUR][1000 genomes]
rs73547839	1.00[EUR][1000 genomes]
rs7985176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7994265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7996730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7997086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7999228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:37709200-37718200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr13:37710800-37718000	Weak transcription	NH-A	brain
3	chr13:37712600-37718200	Weak transcription	Hela-S3	cervix
4	chr13:37713800-37718400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:37714200-37717600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr13:37715800-37718000	Weak transcription	Osteobl	bone
7	chr13:37716000-37719400	Weak transcription	Brain Substantia Nigra	brain
8	chr13:37717400-37717800	Enhancers	Fetal Brain Male	brain
9	chr13:37717400-37719800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr13:37717400-37719800	Enhancers	NHDF-Ad	bronchial
11	chr13:37717400-37720200	Enhancers	Fetal Lung	lung

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