Variant report

Variant	rs17055118
Chromosome Location	chr6:128235945-128235946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1333766	1.00[AMR][1000 genomes]
rs1342647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1342648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055129	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3892307	1.00[AMR][1000 genomes]
rs6920659	1.00[AMR][1000 genomes]
rs7741490	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742615	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743059	1.00[AMR][1000 genomes]
rs926655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128233200-128238400	Weak transcription	Fetal Thymus	thymus
2	chr6:128233600-128237600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:128233800-128236200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr6:128233800-128237600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:128234000-128237600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:128234600-128236600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:128235600-128236000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128235600-128236000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:128235600-128236000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:128235600-128236000	Enhancers	HMEC	breast
11	chr6:128235600-128236200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:128235600-128236600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
13	chr6:128235600-128236800	Enhancers	Primary T cells from cord blood	blood
14	chr6:128235600-128236800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:128235600-128237400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr6:128235800-128236000	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
17	chr6:128235800-128245400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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