Variant report

Variant	rs17055129
Chromosome Location	chr6:128238431-128238432
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1333766	1.00[AMR][1000 genomes]
rs1342647	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1342648	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055102	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055110	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs17055112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055116	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055118	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3892307	1.00[ASW][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs6920659	1.00[AMR][1000 genomes]
rs7741490	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742615	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743059	1.00[AMR][1000 genomes]
rs926655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128235800-128245400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:128237600-128239000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
3	chr6:128237600-128239000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:128237600-128239600	Active TSS	Primary T cells fromperipheralblood	blood
5	chr6:128237600-128240000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr6:128237600-128240400	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr6:128237800-128239800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
8	chr6:128237800-128239800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:128237800-128240000	Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr6:128238000-128239200	Active TSS	Primary T helper naive cells from peripheral blood	blood
11	chr6:128238000-128239400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
12	chr6:128238000-128239800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr6:128238000-128240000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:128238400-128238800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:128238400-128239200	Enhancers	Fetal Thymus	thymus
16	chr6:128238400-128239600	Enhancers	Thymus	Thymus
17	chr6:128238400-128240200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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