Variant report

Variant	rs3892307
Chromosome Location	chr6:128298278-128298279
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1333766	1.00[AMR][1000 genomes]
rs1342647	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs1342648	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17053248	1.00[AMR][1000 genomes]
rs17053250	1.00[AMR][1000 genomes]
rs17055088	1.00[AMR][1000 genomes]
rs17055102	1.00[ASW][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17055110	1.00[ASW][hapmap];0.82[YRI][hapmap]
rs17055112	1.00[AMR][1000 genomes]
rs17055116	1.00[ASW][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17055118	1.00[AMR][1000 genomes]
rs17055129	1.00[ASW][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs17055151	1.00[AMR][1000 genomes]
rs6920659	1.00[AMR][1000 genomes]
rs7741490	1.00[AMR][1000 genomes]
rs7742615	1.00[AMR][1000 genomes]
rs7743059	1.00[AMR][1000 genomes]
rs926655	1.00[AMR][1000 genomes]
rs926656	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv604642	chr6:128278798-128351143	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128280400-128304600	Weak transcription	Fetal Brain Male	brain
2	chr6:128285600-128307400	Weak transcription	Aorta	Aorta
3	chr6:128287000-128300200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:128287200-128309000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:128287600-128308600	Weak transcription	Esophagus	oesophagus
6	chr6:128287800-128303600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:128288000-128304800	Weak transcription	Stomach Mucosa	stomach
8	chr6:128288000-128307600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:128288600-128305400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:128288600-128306800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:128288600-128321800	Weak transcription	Small Intestine	intestine
12	chr6:128288800-128303800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:128289000-128302200	Weak transcription	Brain Germinal Matrix	brain
14	chr6:128289000-128431000	Weak transcription	Psoas Muscle	Psoas
15	chr6:128290000-128308200	Strong transcription	HepG2	liver
16	chr6:128291200-128304400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:128291800-128302200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:128292400-128299000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr6:128292400-128306400	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr6:128292400-128307600	Strong transcription	Liver	Liver
21	chr6:128292600-128307000	Strong transcription	Duodenum Mucosa	Duodenum
22	chr6:128293000-128298600	Strong transcription	Primary B cells from cord blood	blood
23	chr6:128293000-128299600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:128293000-128303800	Weak transcription	Spleen	Spleen
25	chr6:128293000-128305400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr6:128293400-128298400	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:128293600-128299600	Strong transcription	HSMM	muscle
28	chr6:128293600-128374400	Weak transcription	Pancreas	Pancrea
29	chr6:128293800-128307800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:128294000-128306200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:128294200-128300800	Weak transcription	Right Ventricle	heart
32	chr6:128294400-128302200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr6:128294400-128302400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:128294400-128330600	Weak transcription	NHDF-Ad	bronchial
35	chr6:128294600-128299200	Weak transcription	Thymus	Thymus
36	chr6:128295000-128302600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr6:128295000-128304200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:128295200-128299200	Weak transcription	Brain Hippocampus Middle	brain
39	chr6:128295400-128299400	Weak transcription	Dnd41	blood
40	chr6:128295600-128298400	Weak transcription	Primary T cells from cord blood	blood
41	chr6:128295800-128298400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:128295800-128298400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:128295800-128298400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr6:128295800-128299000	Strong transcription	Placenta	Placenta
45	chr6:128295800-128299200	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr6:128295800-128299400	Strong transcription	Fetal Thymus	thymus
47	chr6:128296000-128303800	Weak transcription	A549	lung
48	chr6:128296000-128307000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:128296200-128298600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr6:128296400-128298400	Strong transcription	Brain Angular Gyrus	brain

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