Variant report

Variant	rs7742615
Chromosome Location	chr6:128271285-128271286
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1333766	1.00[AMR][1000 genomes]
rs1342647	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1342648	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053248	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053250	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055088	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055102	1.00[ASW][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055110	1.00[ASW][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap]
rs17055112	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055116	1.00[ASW][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055118	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055129	1.00[ASW][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3892307	1.00[ASW][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs4129795	1.00[CHD][hapmap]
rs6920659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7741490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743059	1.00[AMR][1000 genomes]
rs926655	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926656	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
2	chr6:128269800-128272000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr6:128270200-128271600	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr6:128270400-128272000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr6:128270400-128272200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr6:128270600-128271800	Enhancers	Primary T cells from cord blood	blood
7	chr6:128270600-128293400	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:128270800-128271800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr6:128270800-128272400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr6:128270800-128272600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr6:128271000-128271400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:128271000-128272200	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr6:128271000-128272200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr6:128271000-128273000	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:128271000-128273000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:128271000-128273400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr6:128271200-128271600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:128271200-128272000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:128271200-128272200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:128271200-128272400	Enhancers	Primary B cells from cord blood	blood
21	chr6:128271200-128274400	Enhancers	Dnd41	blood

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