Variant report

Variant	rs6920659
Chromosome Location	chr6:128279331-128279332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1333766	1.00[AMR][1000 genomes]
rs1342647	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1342648	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17053248	1.00[AMR][1000 genomes]
rs17053250	1.00[AMR][1000 genomes]
rs17055088	1.00[AMR][1000 genomes]
rs17055102	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17055110	1.00[YRI][hapmap]
rs17055112	1.00[AMR][1000 genomes]
rs17055116	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17055118	1.00[AMR][1000 genomes]
rs17055129	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17055151	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3892307	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7741490	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743059	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs926655	1.00[AMR][1000 genomes]
rs926656	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv604642	chr6:128278798-128351143	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128270600-128293400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:128272400-128292600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:128278200-128281200	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:128278800-128297200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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