Variant report

Variant	rs7741490
Chromosome Location	chr6:128270861-128270862
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1333766	1.00[AMR][1000 genomes]
rs1342647	0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1342648	0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053248	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17053250	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055088	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055102	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055110	0.82[YRI][hapmap]
rs17055112	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055116	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055118	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055129	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17055151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3892307	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6920659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7742615	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7743059	1.00[AMR][1000 genomes]
rs926655	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs926656	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1849854	chr6:128143774-128287313	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1024516	chr6:128184182-128298278	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128254200-128271400	Weak transcription	Thymus	Thymus
2	chr6:128261400-128271200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr6:128269800-128272000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr6:128270200-128271600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:128270400-128272000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr6:128270400-128272200	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:128270600-128271800	Enhancers	Primary T cells from cord blood	blood
8	chr6:128270600-128293400	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:128270800-128271800	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr6:128270800-128272400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:128270800-128272600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links