Variant report

Variant	rs17094176
Chromosome Location	chr14:97052815-97052816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97045743..97050315-chr14:97052602..97054653,5	K562	blood:
2	chr14:97052527..97055405-chr14:97055714..97057422,2	MCF-7	breast:
3	chr14:97045743..97048506-chr14:97052602..97055379,2	K562	blood:
4	chr14:97052206..97052958-chr14:97207358..97207959,2	MCF-7	breast:
5	chr14:97048738..97051124-chr14:97052648..97054947,2	K562	blood:

Variant related genes	Relation type
ENSG00000258979	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs28701482	1.00[AMR][1000 genomes]
rs55688559	1.00[AMR][1000 genomes]
rs56137414	1.00[AMR][1000 genomes]
rs56265756	1.00[AMR][1000 genomes]
rs56296574	1.00[AMR][1000 genomes]
rs58550318	1.00[AMR][1000 genomes]
rs59282186	1.00[AMR][1000 genomes]
rs59461473	1.00[AMR][1000 genomes]
rs60248045	1.00[AMR][1000 genomes]
rs7146082	1.00[AMR][1000 genomes]
rs73349211	1.00[AMR][1000 genomes]
rs73349218	1.00[AMR][1000 genomes]
rs73353790	1.00[AMR][1000 genomes]
rs73357044	1.00[AMR][1000 genomes]
rs73363299	1.00[AMR][1000 genomes]
rs73365110	1.00[AMR][1000 genomes]
rs73365112	1.00[AMR][1000 genomes]
rs74086703	1.00[AMR][1000 genomes]
rs74086710	1.00[AMR][1000 genomes]
rs74086716	1.00[AMR][1000 genomes]
rs74086718	1.00[AMR][1000 genomes]
rs74086723	1.00[AMR][1000 genomes]
rs74086724	1.00[AMR][1000 genomes]
rs74086728	1.00[AMR][1000 genomes]
rs74086730	1.00[AMR][1000 genomes]
rs74086735	1.00[AMR][1000 genomes]
rs74086741	1.00[AMR][1000 genomes]
rs74086800	1.00[AMR][1000 genomes]
rs74090353	1.00[AMR][1000 genomes]
rs74090354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97043400-97058800	Weak transcription	Right Atrium	heart
2	chr14:97046600-97054200	Enhancers	Fetal Brain Male	brain
3	chr14:97049200-97055400	Weak transcription	Esophagus	oesophagus
4	chr14:97049600-97054000	Enhancers	Fetal Brain Female	brain
5	chr14:97050200-97053200	Weak transcription	Spleen	Spleen
6	chr14:97050200-97058600	Weak transcription	GM12878-XiMat	blood
7	chr14:97050400-97054200	Enhancers	Brain Germinal Matrix	brain
8	chr14:97050800-97053600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:97050800-97054000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr14:97050800-97055600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr14:97051000-97058600	Weak transcription	Pancreas	Pancrea
12	chr14:97051400-97057200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:97051600-97056400	Enhancers	Fetal Lung	lung
14	chr14:97051800-97056800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr14:97052600-97053400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:97052800-97053600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:97052800-97053800	Bivalent Enhancer	Fetal Muscle Leg	muscle

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