Variant report

Variant	rs55688559
Chromosome Location	chr14:96955116-96955117
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:96954618..96956476-chr14:96968310..96969915,2	MCF-7	breast:
2	chr14:96953364..96956341-chr14:96967699..96969947,2	K562	blood:
3	chr14:96951595..96958320-chr14:96966555..96970647,8	MCF-7	breast:
4	chr14:96953479..96956403-chr14:96967198..96969398,3	K562	blood:

Variant related genes	Relation type
ENSG00000260806	Chromatin interaction
ENSG00000090060	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17094176	1.00[AMR][1000 genomes]
rs28701482	1.00[AMR][1000 genomes]
rs56137414	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56265756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56296574	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58550318	1.00[AMR][1000 genomes]
rs59282186	1.00[AMR][1000 genomes]
rs59461473	1.00[AMR][1000 genomes]
rs60121386	1.00[AMR][1000 genomes]
rs60248045	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146082	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7146728	1.00[AMR][1000 genomes]
rs73349211	1.00[AMR][1000 genomes]
rs73349218	1.00[AMR][1000 genomes]
rs73357044	1.00[AMR][1000 genomes]
rs73363250	1.00[AMR][1000 genomes]
rs73363256	1.00[AMR][1000 genomes]
rs73363276	1.00[AMR][1000 genomes]
rs73363284	1.00[AMR][1000 genomes]
rs73363291	1.00[AMR][1000 genomes]
rs73363299	1.00[AMR][1000 genomes]
rs73365110	1.00[AMR][1000 genomes]
rs73365112	1.00[AMR][1000 genomes]
rs74086703	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086710	1.00[AMR][1000 genomes]
rs74086716	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086718	1.00[AMR][1000 genomes]
rs74086723	1.00[AMR][1000 genomes]
rs74086724	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086728	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086730	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086735	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086741	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74086800	1.00[AMR][1000 genomes]
rs74090353	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090354	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043142	chr14:96096263-96978016	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv542177	chr14:96096263-96978016	Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv482589	chr14:96805418-96985830	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
4	nsv1042409	chr14:96832303-97115668	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv542178	chr14:96832303-97115668	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	nsv902211	chr14:96864309-96986153	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
7	esv3442210	chr14:96878392-97038700	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
8	esv1802671	chr14:96942352-97035680	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:96954200-96956200	Weak transcription	Primary B cells from cord blood	blood
2	chr14:96954200-96959000	Weak transcription	GM12878-XiMat	blood
3	chr14:96954400-96957400	Weak transcription	Primary B cells from peripheral blood	blood

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