Variant report

Variant	rs17125621
Chromosome Location	chr11:121533566-121533567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11218400	1.00[AMR][1000 genomes]
rs12272537	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17125632	0.88[LWK][hapmap]
rs57805028	1.00[AMR][1000 genomes]
rs58761437	1.00[AMR][1000 genomes]
rs59726331	1.00[AMR][1000 genomes]
rs61396246	1.00[AMR][1000 genomes]
rs661930	1.00[CHD][hapmap]
rs73585700	1.00[AMR][1000 genomes]
rs73597310	1.00[AMR][1000 genomes]
rs73597354	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597368	1.00[AMR][1000 genomes]
rs73597373	1.00[AMR][1000 genomes]
rs73597375	1.00[AMR][1000 genomes]
rs73597383	1.00[AMR][1000 genomes]
rs73601389	1.00[AMR][1000 genomes]
rs73601397	1.00[AMR][1000 genomes]
rs73603317	1.00[AMR][1000 genomes]
rs73603321	1.00[AMR][1000 genomes]
rs73603334	1.00[AMR][1000 genomes]
rs73603339	1.00[AMR][1000 genomes]
rs73603344	1.00[AMR][1000 genomes]
rs73603355	1.00[AMR][1000 genomes]
rs73603368	1.00[AMR][1000 genomes]
rs7934967	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv34768	chr11:121452651-121534938	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv818867	chr11:121472993-121534938	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2757477	chr11:121473598-121540642	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759866	chr11:121473598-121540642	Genic enhancers Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121525800-121543400	Weak transcription	Gastric	stomach
2	chr11:121527800-121535800	Weak transcription	Right Atrium	heart
3	chr11:121528400-121536200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:121528400-121538600	Weak transcription	Fetal Brain Female	brain
5	chr11:121528600-121540200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:121529800-121533800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:121531000-121533600	Enhancers	NHDF-Ad	bronchial
8	chr11:121531400-121533600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:121531400-121533800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:121532000-121533600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:121532000-121533600	Enhancers	NH-A	brain
12	chr11:121532000-121533800	Enhancers	Osteobl	bone
13	chr11:121533000-121533600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:121533000-121533800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:121533000-121533800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:121533000-121545400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:121533200-121533600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:121533400-121535000	Weak transcription	Brain Germinal Matrix	brain

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