Variant report

Variant	rs73597375
Chromosome Location	chr11:121545376-121545377
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11218400	1.00[AMR][1000 genomes]
rs12272537	1.00[AMR][1000 genomes]
rs12274634	1.00[AMR][1000 genomes]
rs17125621	1.00[AMR][1000 genomes]
rs57805028	1.00[AMR][1000 genomes]
rs58761437	1.00[AMR][1000 genomes]
rs59726331	1.00[AMR][1000 genomes]
rs61396246	1.00[AMR][1000 genomes]
rs73585700	1.00[AMR][1000 genomes]
rs73597310	1.00[AMR][1000 genomes]
rs73597354	1.00[AMR][1000 genomes]
rs73597368	1.00[AMR][1000 genomes]
rs73597373	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597383	1.00[AMR][1000 genomes]
rs73601389	1.00[AMR][1000 genomes]
rs73601397	1.00[AMR][1000 genomes]
rs73603317	1.00[AMR][1000 genomes]
rs73603321	1.00[AMR][1000 genomes]
rs73603334	1.00[AMR][1000 genomes]
rs73603339	1.00[AMR][1000 genomes]
rs73603344	1.00[AMR][1000 genomes]
rs73603355	1.00[AMR][1000 genomes]
rs73603368	1.00[AMR][1000 genomes]
rs7934967	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121533000-121545400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:121541800-121545400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:121542600-121545400	Enhancers	Brain Germinal Matrix	brain
4	chr11:121544200-121554600	Weak transcription	Gastric	stomach
5	chr11:121544400-121545400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:121544400-121545400	Weak transcription	Right Atrium	heart
7	chr11:121545000-121545600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:121545000-121546600	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:121545200-121545400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:121545200-121545400	Enhancers	NH-A	brain
11	chr11:121545200-121545600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:121545200-121545800	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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