Variant report

Variant	rs73597368
Chromosome Location	chr11:121542550-121542551
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11218400	1.00[AMR][1000 genomes]
rs12272537	1.00[AMR][1000 genomes]
rs12274634	1.00[AMR][1000 genomes]
rs17125621	1.00[AMR][1000 genomes]
rs57805028	1.00[AMR][1000 genomes]
rs58761437	1.00[AMR][1000 genomes]
rs59726331	1.00[AMR][1000 genomes]
rs61396246	1.00[AMR][1000 genomes]
rs73585700	1.00[AMR][1000 genomes]
rs73597310	1.00[AMR][1000 genomes]
rs73597354	1.00[AMR][1000 genomes]
rs73597373	1.00[AMR][1000 genomes]
rs73597375	1.00[AMR][1000 genomes]
rs73597383	1.00[AMR][1000 genomes]
rs73601389	1.00[AMR][1000 genomes]
rs73601397	1.00[AMR][1000 genomes]
rs73603317	1.00[AMR][1000 genomes]
rs73603321	1.00[AMR][1000 genomes]
rs73603334	1.00[AMR][1000 genomes]
rs73603339	1.00[AMR][1000 genomes]
rs73603344	1.00[AMR][1000 genomes]
rs73603355	1.00[AMR][1000 genomes]
rs73603368	1.00[AMR][1000 genomes]
rs7934967	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975233	chr11:121359656-121574786	Genic enhancers Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121525800-121543400	Weak transcription	Gastric	stomach
2	chr11:121533000-121545400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:121538600-121544800	Enhancers	Fetal Brain Male	brain
4	chr11:121540000-121544000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:121540000-121544000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr11:121540000-121544200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:121540200-121544800	Enhancers	Fetal Intestine Small	intestine
8	chr11:121540400-121543000	Enhancers	Fetal Kidney	kidney
9	chr11:121540400-121544600	Enhancers	Fetal Intestine Large	intestine
10	chr11:121540400-121544600	Enhancers	Fetal Muscle Leg	muscle
11	chr11:121540800-121544400	Enhancers	Fetal Stomach	stomach
12	chr11:121541000-121545000	Enhancers	Colon Smooth Muscle	Colon
13	chr11:121541200-121542600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr11:121541200-121542600	Flanking Active TSS	Stomach Smooth Muscle	stomach
15	chr11:121541200-121542800	Flanking Active TSS	Fetal Brain Female	brain
16	chr11:121541200-121543600	Enhancers	NH-A	brain
17	chr11:121541200-121544800	Enhancers	Fetal Heart	heart
18	chr11:121541400-121542600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr11:121541400-121542600	Flanking Active TSS	Brain Hippocampus Middle	brain
20	chr11:121541400-121544400	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr11:121541600-121542600	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr11:121541600-121542600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:121541600-121542800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:121541800-121542600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr11:121541800-121542600	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr11:121541800-121542600	Flanking Active TSS	Brain Germinal Matrix	brain
27	chr11:121541800-121542600	Enhancers	Psoas Muscle	Psoas
28	chr11:121541800-121542600	Enhancers	Right Atrium	heart
29	chr11:121541800-121543800	Enhancers	Fetal Thymus	thymus
30	chr11:121541800-121544000	Enhancers	Fetal Lung	lung
31	chr11:121541800-121544400	Enhancers	Fetal Muscle Trunk	muscle
32	chr11:121541800-121545400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr11:121542000-121542600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:121542000-121542600	Flanking Active TSS	Brain Angular Gyrus	brain
35	chr11:121542000-121542600	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr11:121542000-121542600	Enhancers	Right Ventricle	heart
37	chr11:121542000-121542800	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr11:121542000-121542800	Enhancers	Pancreas	Pancrea
39	chr11:121542000-121543000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:121542000-121544200	Enhancers	Left Ventricle	heart
41	chr11:121542200-121542800	Enhancers	Aorta	Aorta
42	chr11:121542200-121543200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:121542200-121543200	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr11:121542200-121544000	Enhancers	Ovary	ovary
45	chr11:121542400-121542600	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr11:121542400-121542800	Active TSS	Brain Substantia Nigra	brain
47	chr11:121542400-121543200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr11:121542400-121543400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr11:121542400-121543400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr11:121542400-121543600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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