Variant report

Variant	rs73603355
Chromosome Location	chr11:121611740-121611741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11218400	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272537	1.00[AMR][1000 genomes]
rs12274634	1.00[AMR][1000 genomes]
rs17125621	1.00[AMR][1000 genomes]
rs57805028	1.00[AMR][1000 genomes]
rs58761437	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59726331	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61396246	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585700	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597310	1.00[AMR][1000 genomes]
rs73597354	1.00[AMR][1000 genomes]
rs73597368	1.00[AMR][1000 genomes]
rs73597373	1.00[AMR][1000 genomes]
rs73597375	1.00[AMR][1000 genomes]
rs73597383	1.00[AMR][1000 genomes]
rs73601389	1.00[AMR][1000 genomes]
rs73601397	1.00[AMR][1000 genomes]
rs73603317	1.00[AMR][1000 genomes]
rs73603321	1.00[AMR][1000 genomes]
rs73603334	1.00[AMR][1000 genomes]
rs73603339	1.00[AMR][1000 genomes]
rs73603344	1.00[AMR][1000 genomes]
rs73603368	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7934967	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121610600-121612000	Enhancers	Rectal Smooth Muscle	rectum
2	chr11:121610600-121614200	Enhancers	Colon Smooth Muscle	Colon
3	chr11:121610800-121612000	Enhancers	Fetal Heart	heart
4	chr11:121611000-121611800	Enhancers	Stomach Smooth Muscle	stomach
5	chr11:121611000-121612400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:121611000-121612600	Enhancers	Brain Cingulate Gyrus	brain
7	chr11:121611000-121612800	Enhancers	Aorta	Aorta
8	chr11:121611000-121612800	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr11:121611000-121613400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:121611000-121614200	Enhancers	Fetal Stomach	stomach
11	chr11:121611200-121612000	Weak transcription	Brain Germinal Matrix	brain
12	chr11:121611200-121612800	Enhancers	Brain Anterior Caudate	brain
13	chr11:121611200-121613400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:121611400-121612600	Enhancers	Left Ventricle	heart
15	chr11:121611600-121612000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:121611600-121612000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr11:121611600-121612000	Enhancers	Brain Substantia Nigra	brain
18	chr11:121611600-121612200	Enhancers	Brain Hippocampus Middle	brain
19	chr11:121611600-121612200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr11:121611600-121612400	Enhancers	Fetal Kidney	kidney
21	chr11:121611600-121612400	Enhancers	Ovary	ovary
22	chr11:121611600-121612400	Enhancers	Right Atrium	heart
23	chr11:121611600-121612600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr11:121611600-121613000	Enhancers	Brain Angular Gyrus	brain
25	chr11:121611600-121613200	Enhancers	Fetal Lung	lung

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