Variant report

Variant	rs58761437
Chromosome Location	chr11:121647070-121647071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11218400	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12272537	1.00[AMR][1000 genomes]
rs12274634	1.00[AMR][1000 genomes]
rs17125621	1.00[AMR][1000 genomes]
rs57805028	1.00[AMR][1000 genomes]
rs59726331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61396246	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73585700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73597310	1.00[AMR][1000 genomes]
rs73597354	1.00[AMR][1000 genomes]
rs73597368	1.00[AMR][1000 genomes]
rs73597373	1.00[AMR][1000 genomes]
rs73597375	1.00[AMR][1000 genomes]
rs73597383	1.00[AMR][1000 genomes]
rs73601389	1.00[AMR][1000 genomes]
rs73601397	1.00[AMR][1000 genomes]
rs73603317	1.00[AMR][1000 genomes]
rs73603321	1.00[AMR][1000 genomes]
rs73603334	1.00[AMR][1000 genomes]
rs73603339	1.00[AMR][1000 genomes]
rs73603344	1.00[AMR][1000 genomes]
rs73603355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603368	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7934967	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121637600-121648000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:121642800-121647400	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:121645600-121648200	Enhancers	Stomach Smooth Muscle	stomach
4	chr11:121646600-121648000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:121646800-121647200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:121647000-121648400	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:121647000-121648600	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links