Variant report

Variant	rs73603317
Chromosome Location	chr11:121580091-121580092
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11218400	1.00[AMR][1000 genomes]
rs12272537	1.00[AMR][1000 genomes]
rs12274634	1.00[AMR][1000 genomes]
rs17125621	1.00[AMR][1000 genomes]
rs57805028	1.00[AMR][1000 genomes]
rs58761437	1.00[AMR][1000 genomes]
rs59726331	1.00[AMR][1000 genomes]
rs61396246	1.00[AMR][1000 genomes]
rs73585700	1.00[AMR][1000 genomes]
rs73597310	1.00[AMR][1000 genomes]
rs73597354	1.00[AMR][1000 genomes]
rs73597368	1.00[AMR][1000 genomes]
rs73597373	1.00[AMR][1000 genomes]
rs73597375	1.00[AMR][1000 genomes]
rs73597383	1.00[AMR][1000 genomes]
rs73601389	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73601397	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603321	1.00[AMR][1000 genomes]
rs73603334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603339	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603344	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73603355	1.00[AMR][1000 genomes]
rs73603368	1.00[AMR][1000 genomes]
rs7934967	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898428	chr11:121568262-121671976	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv975988	chr11:121574786-121593725	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv832287	chr11:121575379-121722735	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121573800-121582600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:121578200-121580200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:121579400-121580200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr11:121579400-121580200	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr11:121579600-121580200	Enhancers	Psoas Muscle	Psoas
6	chr11:121579800-121580200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:121579800-121580200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:121579800-121580600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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