Variant report

Variant	rs17131342
Chromosome Location	chr1:71012491-71012492
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12058271	1.00[EUR][1000 genomes]
rs12070022	1.00[EUR][1000 genomes]
rs12074313	1.00[EUR][1000 genomes]
rs12092951	1.00[EUR][1000 genomes]
rs12098192	1.00[EUR][1000 genomes]
rs1577367	1.00[EUR][1000 genomes]
rs17131407	1.00[EUR][1000 genomes]
rs1932059	1.00[EUR][1000 genomes]
rs28415396	1.00[EUR][1000 genomes]
rs2992040	1.00[EUR][1000 genomes]
rs72926266	1.00[EUR][1000 genomes]
rs74085288	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7516046	1.00[EUR][1000 genomes]
rs7544159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999219	chr1:70730556-71014911	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71011800-71013000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:71011800-71013000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:71011800-71013000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr1:71012000-71013000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr1:71012000-71013000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:71012200-71013000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:71012200-71013000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr1:71012200-71013000	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:71012400-71012800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:71012400-71012800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr1:71012400-71013000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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