Variant report

Variant	rs17161786
Chromosome Location	chr7:99242173-99242174
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99215097..99218324-chr7:99240353..99243377,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197037	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs1965481	1.00[EUR][1000 genomes]
rs2015504	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	0.82[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2687107	1.00[EUR][1000 genomes]
rs2687110	1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2737418	1.00[EUR][1000 genomes]
rs2738258	1.00[EUR][1000 genomes]
rs2740570	1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs28988585	1.00[EUR][1000 genomes]
rs34160508	1.00[GIH][hapmap]
rs34314536	1.00[EUR][1000 genomes]
rs34402397	1.00[EUR][1000 genomes]
rs41300737	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41303946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45469701	1.00[AMR][1000 genomes]
rs45486103	1.00[AMR][1000 genomes]
rs45518537	1.00[AMR][1000 genomes]
rs45536437	1.00[AMR][1000 genomes]
rs45609448	1.00[AMR][1000 genomes]
rs473706	1.00[TSI][hapmap]
rs493380	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs4987160	1.00[AMR][1000 genomes]
rs56337765	1.00[EUR][1000 genomes]
rs58679015	1.00[EUR][1000 genomes]
rs61538655	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61735345	1.00[AMR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[EUR][1000 genomes]
rs740159	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99225400-99243000	Weak transcription	Fetal Brain Male	brain
2	chr7:99228200-99244200	Weak transcription	Psoas Muscle	Psoas
3	chr7:99228400-99258000	Weak transcription	Colon Smooth Muscle	Colon
4	chr7:99228400-99258800	Weak transcription	Ovary	ovary
5	chr7:99228800-99249000	Weak transcription	Small Intestine	intestine
6	chr7:99229200-99243200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:99229200-99267400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr7:99229200-99275000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:99229400-99257400	Weak transcription	Fetal Lung	lung
10	chr7:99229400-99257800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:99229800-99255400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:99229800-99257200	Weak transcription	Esophagus	oesophagus
13	chr7:99229800-99257600	Weak transcription	Pancreas	Pancrea
14	chr7:99229800-99260200	Weak transcription	Left Ventricle	heart
15	chr7:99229800-99272600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:99230200-99243000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:99230200-99257200	Weak transcription	Gastric	stomach
18	chr7:99230400-99243800	Weak transcription	NHLF	lung
19	chr7:99230400-99249000	Weak transcription	Colonic Mucosa	Colon
20	chr7:99230400-99257600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:99230400-99272000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr7:99230600-99243400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:99230800-99243200	Weak transcription	Thymus	Thymus
24	chr7:99230800-99258000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr7:99231400-99248800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr7:99231600-99252400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr7:99231800-99242600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:99231800-99243000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr7:99231800-99245000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr7:99231800-99246600	Weak transcription	Primary hematopoietic stem cells	blood
31	chr7:99231800-99247400	Weak transcription	Brain Hippocampus Middle	brain
32	chr7:99231800-99247800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:99231800-99250000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:99231800-99258000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:99231800-99258000	Weak transcription	Brain Substantia Nigra	brain
36	chr7:99231800-99260200	Weak transcription	K562	blood
37	chr7:99231800-99264600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr7:99231800-99268000	Weak transcription	Brain Anterior Caudate	brain
39	chr7:99231800-99268600	Weak transcription	HepG2	liver
40	chr7:99232000-99244000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr7:99232000-99245400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:99232000-99246400	Weak transcription	Fetal Intestine Large	intestine
43	chr7:99232000-99258600	Weak transcription	Primary B cells from cord blood	blood
44	chr7:99232000-99275000	Weak transcription	A549	lung
45	chr7:99232200-99242200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr7:99232200-99244000	Weak transcription	Fetal Muscle Leg	muscle
47	chr7:99232200-99247000	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr7:99232200-99250600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr7:99232400-99243400	Weak transcription	Brain Germinal Matrix	brain
50	chr7:99233000-99266000	Weak transcription	NHEK	skin

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