Variant report
| Variant | rs28808927 |
|---|---|
| Chromosome Location | chr7:99404280-99404281 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10255255 | 1.00[EUR][1000 genomes] |
| rs10275362 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17161786 | 1.00[EUR][1000 genomes] |
| rs1965481 | 1.00[EUR][1000 genomes] |
| rs2015504 | 1.00[EUR][1000 genomes] |
| rs2404767 | 1.00[EUR][1000 genomes] |
| rs2687089 | 1.00[EUR][1000 genomes] |
| rs2687095 | 1.00[EUR][1000 genomes] |
| rs2687102 | 1.00[EUR][1000 genomes] |
| rs2687103 | 1.00[EUR][1000 genomes] |
| rs2687107 | 1.00[EUR][1000 genomes] |
| rs2687110 | 1.00[EUR][1000 genomes] |
| rs2687127 | 1.00[EUR][1000 genomes] |
| rs2737418 | 1.00[EUR][1000 genomes] |
| rs2738258 | 1.00[EUR][1000 genomes] |
| rs2740570 | 1.00[EUR][1000 genomes] |
| rs28988585 | 1.00[EUR][1000 genomes] |
| rs34314536 | 1.00[EUR][1000 genomes] |
| rs34402397 | 1.00[EUR][1000 genomes] |
| rs41300737 | 1.00[EUR][1000 genomes] |
| rs41303946 | 1.00[EUR][1000 genomes] |
| rs493380 | 1.00[EUR][1000 genomes] |
| rs4986911 | 1.00[EUR][1000 genomes] |
| rs56337765 | 1.00[EUR][1000 genomes] |
| rs58679015 | 1.00[EUR][1000 genomes] |
| rs58750403 | 1.00[EUR][1000 genomes] |
| rs73408563 | 1.00[EUR][1000 genomes] |
| rs73408565 | 1.00[EUR][1000 genomes] |
| rs73711661 | 1.00[EUR][1000 genomes] |
| rs73711662 | 1.00[EUR][1000 genomes] |
| rs73711666 | 1.00[EUR][1000 genomes] |
| rs73711671 | 1.00[EUR][1000 genomes] |
| rs73711677 | 1.00[EUR][1000 genomes] |
| rs73711681 | 1.00[EUR][1000 genomes] |
| rs73711684 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1827709 | chr7:99353500-99440051 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:99403600-99404400 | Enhancers | Dnd41 | blood |
| 2 | chr7:99404200-99405800 | Flanking Active TSS | K562 | blood |
