Variant report

Variant	rs73711671
Chromosome Location	chr7:99498913-99498914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99497251..99500127-chr7:99514363..99515928,2	K562	blood:
2	chr7:99493888..99497270-chr7:99498893..99502551,4	K562	blood:
3	chr7:99497660..99499357-chr7:99505132..99507252,2	K562	blood:

Variant related genes	Relation type
ENSG00000146833	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs1965481	1.00[EUR][1000 genomes]
rs2015504	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	1.00[EUR][1000 genomes]
rs2687107	1.00[EUR][1000 genomes]
rs2687110	1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2737418	1.00[EUR][1000 genomes]
rs2738258	1.00[EUR][1000 genomes]
rs2740570	1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs28988585	1.00[EUR][1000 genomes]
rs34314536	1.00[EUR][1000 genomes]
rs34402397	1.00[EUR][1000 genomes]
rs41300737	1.00[EUR][1000 genomes]
rs493380	1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs56337765	1.00[EUR][1000 genomes]
rs58679015	1.00[EUR][1000 genomes]
rs58750403	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[EUR][1000 genomes]
rs73711666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73711677	1.00[EUR][1000 genomes]
rs73711681	1.00[EUR][1000 genomes]
rs73711684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99479800-99499200	Weak transcription	Small Intestine	intestine
2	chr7:99485200-99499000	Weak transcription	Psoas Muscle	Psoas
3	chr7:99486400-99501000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:99486800-99499200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:99488000-99499200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:99488400-99499000	Weak transcription	Fetal Kidney	kidney
7	chr7:99490200-99500200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:99490600-99499000	Weak transcription	NHEK	skin
9	chr7:99490600-99499200	Weak transcription	Gastric	stomach
10	chr7:99490600-99499400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:99492600-99516600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:99493200-99499400	Weak transcription	Right Atrium	heart
13	chr7:99494600-99508800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr7:99494800-99507200	Strong transcription	Stomach Smooth Muscle	stomach
15	chr7:99495400-99499400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:99495400-99501600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr7:99495400-99501600	Strong transcription	Lung	lung
18	chr7:99495400-99501800	Strong transcription	Primary B cells from cord blood	blood
19	chr7:99495400-99504800	Strong transcription	Fetal Brain Female	brain
20	chr7:99495400-99507200	Strong transcription	Brain Inferior Temporal Lobe	brain
21	chr7:99495400-99510200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:99495400-99514400	Weak transcription	Stomach Mucosa	stomach
23	chr7:99495600-99501800	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:99495600-99504800	Strong transcription	Brain Germinal Matrix	brain
25	chr7:99495600-99507200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr7:99495600-99507200	Strong transcription	Brain Angular Gyrus	brain
27	chr7:99495600-99507400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr7:99495600-99507400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr7:99495600-99507400	Strong transcription	Adipose Nuclei	Adipose
30	chr7:99495600-99507400	Strong transcription	Duodenum Mucosa	Duodenum
31	chr7:99495600-99507600	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr7:99495600-99507600	Strong transcription	Sigmoid Colon	Sigmoid Colon
33	chr7:99495600-99509600	Strong transcription	Primary T cells from cord blood	blood
34	chr7:99495600-99510200	Strong transcription	Fetal Muscle Trunk	muscle
35	chr7:99495600-99510800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr7:99495800-99501600	Strong transcription	Brain Cingulate Gyrus	brain
37	chr7:99495800-99504800	Strong transcription	NHLF	lung
38	chr7:99495800-99507200	Strong transcription	Brain Hippocampus Middle	brain
39	chr7:99495800-99507200	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:99495800-99507200	Strong transcription	Left Ventricle	heart
41	chr7:99495800-99507600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr7:99495800-99507800	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr7:99495800-99508000	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr7:99495800-99508200	Strong transcription	A549	lung
45	chr7:99495800-99510000	Strong transcription	Fetal Thymus	thymus
46	chr7:99495800-99510200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr7:99495800-99510600	Strong transcription	Monocytes-CD14+_RO01746	blood
48	chr7:99496000-99499200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr7:99496000-99504200	Strong transcription	Brain Anterior Caudate	brain
50	chr7:99496000-99507400	Strong transcription	Primary T helper cells PMA-I stimulated	--

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