Variant report

Variant	rs73711684
Chromosome Location	chr7:99521262-99521263
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:99521160-99521310	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99519062..99522170-chr7:99534160..99538120,3	K562	blood:
2	chr7:99519344..99522278-chr7:99625729..99627804,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CYP3A43-1	chr7:99518807-99522933	NONHSAT122276

Variant related genes	Relation type
TRIM4	TF binding region
ENSG00000199711	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs1965481	1.00[EUR][1000 genomes]
rs2015504	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	1.00[EUR][1000 genomes]
rs2687107	1.00[EUR][1000 genomes]
rs2687110	1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2737418	1.00[EUR][1000 genomes]
rs2738258	1.00[EUR][1000 genomes]
rs2740570	1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs28988585	1.00[EUR][1000 genomes]
rs34314536	1.00[EUR][1000 genomes]
rs34402397	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs493380	1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs56337765	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58679015	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58750403	1.00[EUR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711666	1.00[EUR][1000 genomes]
rs73711671	1.00[EUR][1000 genomes]
rs73711677	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711681	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99517600-99524400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:99517600-99526800	Weak transcription	Gastric	stomach
3	chr7:99517800-99521600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr7:99517800-99526600	Weak transcription	Esophagus	oesophagus
5	chr7:99517800-99526600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr7:99518000-99521400	Weak transcription	Fetal Intestine Small	intestine
7	chr7:99518000-99526600	Weak transcription	Fetal Stomach	stomach
8	chr7:99518200-99521400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr7:99518200-99521400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:99518200-99521600	Weak transcription	NHDF-Ad	bronchial
11	chr7:99518200-99521800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:99518200-99522000	Weak transcription	Primary T cells from cord blood	blood
13	chr7:99518200-99522000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr7:99518200-99522000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:99518200-99522400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:99518200-99523000	Weak transcription	Fetal Intestine Large	intestine
17	chr7:99518200-99523000	Weak transcription	Osteobl	bone
18	chr7:99518200-99523600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:99518200-99523600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:99518200-99524000	Weak transcription	HMEC	breast
21	chr7:99518200-99524200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:99518200-99524400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:99518200-99525800	Weak transcription	Adipose Nuclei	Adipose
24	chr7:99518200-99526600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr7:99518200-99526800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:99518200-99526800	Weak transcription	Brain Anterior Caudate	brain
27	chr7:99518200-99526800	Weak transcription	Brain Hippocampus Middle	brain
28	chr7:99518200-99527000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:99518200-99527000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:99518400-99522000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr7:99518400-99523800	Weak transcription	NHEK	skin
32	chr7:99518400-99526800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr7:99518400-99526800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:99518600-99523000	Weak transcription	GM12878-XiMat	blood
35	chr7:99518600-99526400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:99519400-99522800	Weak transcription	Fetal Lung	lung
37	chr7:99519400-99523800	Weak transcription	NHLF	lung
38	chr7:99519600-99521800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr7:99519600-99522200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:99519600-99522400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr7:99519600-99523600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:99519600-99526200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:99519800-99522200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr7:99519800-99522200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr7:99519800-99526800	Weak transcription	HSMM	muscle
46	chr7:99521200-99521400	Enhancers	Thymus	Thymus

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