Variant report

Variant	rs58750403
Chromosome Location	chr7:99505905-99505906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99505834..99508326-chr7:99515358..99517138,2	K562	blood:
2	chr7:99277161..99280107-chr7:99504584..99506238,2	K562	blood:

Variant related genes	Relation type
ENSG00000106258	Chromatin interaction
ENSG00000146833	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs1965481	1.00[EUR][1000 genomes]
rs2015504	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	1.00[EUR][1000 genomes]
rs2687107	1.00[EUR][1000 genomes]
rs2687110	1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2737418	1.00[EUR][1000 genomes]
rs2738258	1.00[EUR][1000 genomes]
rs2740570	1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs28988585	1.00[EUR][1000 genomes]
rs34314536	1.00[EUR][1000 genomes]
rs34402397	1.00[EUR][1000 genomes]
rs41300737	1.00[EUR][1000 genomes]
rs493380	1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs56337765	1.00[EUR][1000 genomes]
rs58679015	1.00[EUR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[EUR][1000 genomes]
rs73711666	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711671	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711677	1.00[EUR][1000 genomes]
rs73711681	1.00[EUR][1000 genomes]
rs73711684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99492600-99516600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:99494600-99508800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:99494800-99507200	Strong transcription	Stomach Smooth Muscle	stomach
4	chr7:99495400-99507200	Strong transcription	Brain Inferior Temporal Lobe	brain
5	chr7:99495400-99510200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:99495400-99514400	Weak transcription	Stomach Mucosa	stomach
7	chr7:99495600-99507200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:99495600-99507200	Strong transcription	Brain Angular Gyrus	brain
9	chr7:99495600-99507400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr7:99495600-99507400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr7:99495600-99507400	Strong transcription	Adipose Nuclei	Adipose
12	chr7:99495600-99507400	Strong transcription	Duodenum Mucosa	Duodenum
13	chr7:99495600-99507600	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr7:99495600-99507600	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:99495600-99509600	Strong transcription	Primary T cells from cord blood	blood
16	chr7:99495600-99510200	Strong transcription	Fetal Muscle Trunk	muscle
17	chr7:99495600-99510800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr7:99495800-99507200	Strong transcription	Brain Hippocampus Middle	brain
19	chr7:99495800-99507200	Strong transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:99495800-99507200	Strong transcription	Left Ventricle	heart
21	chr7:99495800-99507600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:99495800-99507800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr7:99495800-99508000	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr7:99495800-99508200	Strong transcription	A549	lung
25	chr7:99495800-99510000	Strong transcription	Fetal Thymus	thymus
26	chr7:99495800-99510200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr7:99495800-99510600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr7:99496000-99507400	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:99496000-99507400	Strong transcription	Fetal Intestine Large	intestine
30	chr7:99496000-99507600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:99496000-99509600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr7:99496200-99509400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:99496400-99507200	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr7:99496400-99507400	Strong transcription	Liver	Liver
35	chr7:99496400-99508800	Strong transcription	Primary B cells from peripheral blood	blood
36	chr7:99496400-99510000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr7:99496400-99510600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:99496600-99507200	Strong transcription	Muscle Satellite Cultured Cells	--
39	chr7:99496600-99507400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:99496600-99508800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr7:99497000-99506000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:99497000-99510200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr7:99497000-99510200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr7:99497200-99507400	Strong transcription	GM12878-XiMat	blood
45	chr7:99497200-99510400	Strong transcription	Dnd41	blood
46	chr7:99497600-99507200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:99497600-99507200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr7:99497600-99507400	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr7:99497600-99507400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:99497800-99507200	Strong transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links