Variant report

Variant	rs34402397
Chromosome Location	chr7:99490323-99490324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99488840..99491741-chr7:99492480..99496250,3	K562	blood:
2	chr7:99485783..99488764-chr7:99489956..99491818,2	K562	blood:
3	chr7:99489288..99492873-chr7:99495925..99498517,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs17161786	1.00[EUR][1000 genomes]
rs1965481	1.00[EUR][1000 genomes]
rs2015504	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	1.00[EUR][1000 genomes]
rs2687107	1.00[EUR][1000 genomes]
rs2687110	1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2737418	1.00[EUR][1000 genomes]
rs2738258	1.00[EUR][1000 genomes]
rs2740570	1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs28988585	1.00[EUR][1000 genomes]
rs34314536	1.00[EUR][1000 genomes]
rs41300737	1.00[EUR][1000 genomes]
rs41303946	1.00[EUR][1000 genomes]
rs493380	1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs56337765	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58679015	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58750403	1.00[EUR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711666	1.00[EUR][1000 genomes]
rs73711671	1.00[EUR][1000 genomes]
rs73711677	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711681	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711684	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	esv1792388	chr7:99468155-99497338	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99479800-99499200	Weak transcription	Small Intestine	intestine
2	chr7:99485200-99499000	Weak transcription	Psoas Muscle	Psoas
3	chr7:99485600-99498200	Weak transcription	NHDF-Ad	bronchial
4	chr7:99485800-99495400	Weak transcription	GM12878-XiMat	blood
5	chr7:99485800-99498200	Weak transcription	HSMMtube	muscle
6	chr7:99485800-99498800	Weak transcription	K562	blood
7	chr7:99486000-99497400	Weak transcription	Esophagus	oesophagus
8	chr7:99486400-99501000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr7:99486600-99498000	Weak transcription	NH-A	brain
10	chr7:99486800-99490600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:99486800-99491200	Strong transcription	Primary T cells from cord blood	blood
12	chr7:99486800-99498800	Weak transcription	HUVEC	blood vessel
13	chr7:99486800-99499200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr7:99487000-99490400	Strong transcription	Adipose Nuclei	Adipose
15	chr7:99487000-99490400	Strong transcription	Placenta	Placenta
16	chr7:99487000-99490600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr7:99487000-99490600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:99487000-99490600	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr7:99487000-99490600	Strong transcription	Right Ventricle	heart
20	chr7:99487000-99490600	Strong transcription	Stomach Smooth Muscle	stomach
21	chr7:99487000-99490600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr7:99487200-99490400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:99487200-99490600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:99487200-99490600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr7:99487200-99490600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr7:99487200-99490600	Strong transcription	Brain Anterior Caudate	brain
27	chr7:99487200-99490600	Strong transcription	Brain Cingulate Gyrus	brain
28	chr7:99487200-99490600	Strong transcription	Brain Hippocampus Middle	brain
29	chr7:99487200-99490600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr7:99487200-99490600	Strong transcription	Fetal Muscle Trunk	muscle
31	chr7:99487200-99490600	Strong transcription	Ovary	ovary
32	chr7:99487200-99490600	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr7:99487400-99490400	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr7:99487400-99490600	Strong transcription	Brain Angular Gyrus	brain
35	chr7:99487400-99490600	Strong transcription	Left Ventricle	heart
36	chr7:99487600-99496600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr7:99487600-99498200	Weak transcription	HSMM	muscle
38	chr7:99487800-99490600	Strong transcription	Sigmoid Colon	Sigmoid Colon
39	chr7:99487800-99497000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr7:99487800-99497800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:99487800-99498200	Weak transcription	HepG2	liver
42	chr7:99488000-99490400	Strong transcription	Primary hematopoietic stem cells	blood
43	chr7:99488000-99490400	Strong transcription	Liver	Liver
44	chr7:99488000-99490600	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr7:99488000-99495400	Weak transcription	Primary B cells from cord blood	blood
46	chr7:99488000-99495400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr7:99488000-99496000	Weak transcription	Fetal Intestine Large	intestine
48	chr7:99488000-99497600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr7:99488000-99497600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr7:99488000-99499200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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