Variant report

Variant	rs28988585
Chromosome Location	chr7:99365642-99365643
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs17161786	1.00[EUR][1000 genomes]
rs1965481	1.00[EUR][1000 genomes]
rs2015504	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	1.00[EUR][1000 genomes]
rs2687107	1.00[EUR][1000 genomes]
rs2687110	1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2737418	1.00[EUR][1000 genomes]
rs2738258	1.00[EUR][1000 genomes]
rs2740570	1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs34314536	1.00[EUR][1000 genomes]
rs34402397	1.00[EUR][1000 genomes]
rs41300728	1.00[AMR][1000 genomes]
rs41300737	1.00[EUR][1000 genomes]
rs41303946	1.00[EUR][1000 genomes]
rs493380	1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs56337765	1.00[EUR][1000 genomes]
rs58679015	1.00[EUR][1000 genomes]
rs58750403	1.00[EUR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[EUR][1000 genomes]
rs73711666	1.00[EUR][1000 genomes]
rs73711671	1.00[EUR][1000 genomes]
rs73711677	1.00[EUR][1000 genomes]
rs73711681	1.00[EUR][1000 genomes]
rs73711684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3450108	chr7:99339737-99383419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv482109	chr7:99354604-99381808	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv970558	chr7:99358519-99389907	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99350800-99369800	Weak transcription	Pancreas	Pancrea
2	chr7:99355400-99365800	Strong transcription	Liver	Liver
3	chr7:99364400-99369600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:99365000-99365800	Enhancers	Primary B cells from peripheral blood	blood
5	chr7:99365000-99365800	Enhancers	Dnd41	blood
6	chr7:99365000-99365800	Flanking Active TSS	GM12878-XiMat	blood
7	chr7:99365000-99366400	Enhancers	Fetal Lung	lung
8	chr7:99365200-99366200	Weak transcription	K562	blood
9	chr7:99365400-99366200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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