Variant report

Variant	rs73711677
Chromosome Location	chr7:99509698-99509699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr7:99509688-99509868	HepG2	liver:	n/a	chr7:99509800-99509815

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99509274..99509946-chr7:99588276..99588980,2	MCF-7	breast:
2	chr7:99509318..99511551-chr7:99698004..99700777,2	K562	blood:

Variant related genes	Relation type
TRIM4	TF binding region
ENSG00000221838	Chromatin interaction
ENSG00000166508	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs1965481	1.00[EUR][1000 genomes]
rs2015504	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	1.00[EUR][1000 genomes]
rs2687107	1.00[EUR][1000 genomes]
rs2687110	1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2737418	1.00[EUR][1000 genomes]
rs2738258	1.00[EUR][1000 genomes]
rs2740570	1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs28988585	1.00[EUR][1000 genomes]
rs34314536	1.00[EUR][1000 genomes]
rs34402397	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs41300737	1.00[EUR][1000 genomes]
rs493380	1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs56337765	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58679015	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58750403	1.00[EUR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711666	1.00[EUR][1000 genomes]
rs73711671	1.00[EUR][1000 genomes]
rs73711681	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73711684	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829865	chr7:99430678-99755141	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
2	esv1830649	chr7:99430678-99755141	Strong transcription Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1131 gene(s)	inside rSNPs	diseases
3	nsv534298	chr7:99478011-99886076	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1132 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99492600-99516600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:99495400-99510200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr7:99495400-99514400	Weak transcription	Stomach Mucosa	stomach
4	chr7:99495600-99510200	Strong transcription	Fetal Muscle Trunk	muscle
5	chr7:99495600-99510800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr7:99495800-99510000	Strong transcription	Fetal Thymus	thymus
7	chr7:99495800-99510200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:99495800-99510600	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr7:99496400-99510000	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr7:99496400-99510600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:99497000-99510200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr7:99497000-99510200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr7:99497200-99510400	Strong transcription	Dnd41	blood
14	chr7:99499600-99510000	Strong transcription	Primary hematopoietic stem cells	blood
15	chr7:99499800-99509800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:99499800-99512000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:99502600-99509800	Strong transcription	Primary B cells from cord blood	blood
18	chr7:99503000-99516400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:99503800-99510200	Strong transcription	Fetal Lung	lung
20	chr7:99505400-99510000	Strong transcription	HepG2	liver
21	chr7:99505400-99510400	Strong transcription	HMEC	breast
22	chr7:99506000-99510000	Strong transcription	Thymus	Thymus
23	chr7:99506000-99510200	Strong transcription	Fetal Muscle Leg	muscle
24	chr7:99506400-99515800	Weak transcription	Fetal Heart	heart
25	chr7:99507000-99511600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr7:99507000-99512200	Weak transcription	Right Ventricle	heart
27	chr7:99507000-99515000	Weak transcription	Psoas Muscle	Psoas
28	chr7:99507000-99515600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr7:99507200-99511400	Weak transcription	Brain Hippocampus Middle	brain
30	chr7:99507200-99511600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr7:99507200-99511600	Weak transcription	Brain Angular Gyrus	brain
32	chr7:99507200-99511600	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr7:99507200-99511600	Weak transcription	Fetal Brain Female	brain
34	chr7:99507200-99511600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:99507200-99511800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr7:99507200-99511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:99507200-99511800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr7:99507200-99511800	Weak transcription	Lung	lung
39	chr7:99507200-99512200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:99507200-99512200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr7:99507200-99512400	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr7:99507200-99512800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr7:99507200-99512800	Weak transcription	Primary neutrophils fromperipheralblood	blood
44	chr7:99507200-99512800	Weak transcription	Colon Smooth Muscle	Colon
45	chr7:99507200-99513200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr7:99507200-99513200	Weak transcription	Placenta	Placenta
47	chr7:99507200-99513400	Weak transcription	Aorta	Aorta
48	chr7:99507200-99513400	Weak transcription	Hela-S3	cervix
49	chr7:99507200-99513800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr7:99507200-99514600	Weak transcription	NHDF-Ad	bronchial

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