Variant report

Variant	rs2737418
Chromosome Location	chr7:99389000-99389001
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs17161786	0.82[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1851426	0.92[GIH][hapmap]
rs1965481	1.00[EUR][1000 genomes]
rs2015504	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2687107	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2687110	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2738258	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2740570	0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs28988585	1.00[EUR][1000 genomes]
rs34160508	0.82[GIH][hapmap]
rs34314536	1.00[EUR][1000 genomes]
rs34402397	1.00[EUR][1000 genomes]
rs41300737	1.00[EUR][1000 genomes]
rs41303946	1.00[EUR][1000 genomes]
rs473706	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs493380	1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs56337765	1.00[EUR][1000 genomes]
rs58679015	1.00[EUR][1000 genomes]
rs58750403	1.00[EUR][1000 genomes]
rs6949486	0.87[AMR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[EUR][1000 genomes]
rs73711666	1.00[EUR][1000 genomes]
rs73711671	1.00[EUR][1000 genomes]
rs73711677	1.00[EUR][1000 genomes]
rs73711681	1.00[EUR][1000 genomes]
rs73711684	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827709	chr7:99353500-99440051	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv970558	chr7:99358519-99389907	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99383400-99390000	Enhancers	HMEC	breast
2	chr7:99383600-99390000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:99385000-99389800	Weak transcription	K562	blood
4	chr7:99385800-99389600	Weak transcription	Pancreas	Pancrea
5	chr7:99385800-99391600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:99386000-99389800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:99386000-99389800	Enhancers	NHDF-Ad	bronchial
8	chr7:99386000-99389800	Enhancers	Osteobl	bone
9	chr7:99386200-99389000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr7:99386200-99389200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr7:99386200-99391800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr7:99386200-99392400	Weak transcription	Stomach Mucosa	stomach
13	chr7:99386400-99389800	Enhancers	Liver	Liver
14	chr7:99386800-99389200	Weak transcription	HepG2	liver
15	chr7:99387400-99392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr7:99388000-99389000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:99388000-99389800	Weak transcription	Psoas Muscle	Psoas
18	chr7:99388400-99389200	Enhancers	NH-A	brain
19	chr7:99388600-99389600	Enhancers	NHEK	skin
20	chr7:99388600-99391000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr7:99388600-99391600	Enhancers	Fetal Intestine Large	intestine
22	chr7:99388600-99393200	Enhancers	Fetal Intestine Small	intestine
23	chr7:99388800-99391200	Enhancers	Duodenum Mucosa	Duodenum
24	chr7:99388800-99392600	Weak transcription	HSMM	muscle
25	chr7:99388800-99392600	Weak transcription	HSMMtube	muscle
26	chr7:99389000-99389400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:99389000-99389400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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