Variant report

Variant	rs2015504
Chromosome Location	chr7:99350068-99350069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:99348892..99351554-chr7:99353145..99355344,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10255255	1.00[EUR][1000 genomes]
rs10275362	1.00[EUR][1000 genomes]
rs17161786	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs1965481	1.00[EUR][1000 genomes]
rs2404767	1.00[EUR][1000 genomes]
rs2687089	1.00[EUR][1000 genomes]
rs2687095	1.00[EUR][1000 genomes]
rs2687102	1.00[EUR][1000 genomes]
rs2687103	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2687107	1.00[EUR][1000 genomes]
rs2687110	1.00[EUR][1000 genomes]
rs2687127	1.00[EUR][1000 genomes]
rs2737418	1.00[EUR][1000 genomes]
rs2738258	1.00[EUR][1000 genomes]
rs2740570	1.00[EUR][1000 genomes]
rs28808927	1.00[EUR][1000 genomes]
rs28988585	1.00[EUR][1000 genomes]
rs34314536	1.00[EUR][1000 genomes]
rs34402397	1.00[EUR][1000 genomes]
rs41300737	1.00[EUR][1000 genomes]
rs41303946	1.00[EUR][1000 genomes]
rs473706	1.00[TSI][hapmap]
rs493380	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4986911	1.00[EUR][1000 genomes]
rs56337765	1.00[EUR][1000 genomes]
rs58679015	1.00[EUR][1000 genomes]
rs58750403	1.00[EUR][1000 genomes]
rs73408563	1.00[EUR][1000 genomes]
rs73408565	1.00[EUR][1000 genomes]
rs73711661	1.00[EUR][1000 genomes]
rs73711662	1.00[EUR][1000 genomes]
rs73711666	1.00[EUR][1000 genomes]
rs73711671	1.00[EUR][1000 genomes]
rs73711677	1.00[EUR][1000 genomes]
rs73711681	1.00[EUR][1000 genomes]
rs73711684	1.00[EUR][1000 genomes]
rs892752	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482532	chr7:99205906-99363886	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv888771	chr7:99294762-99355278	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	esv3331003	chr7:99337054-99386069	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv3450108	chr7:99339737-99383419	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv981555	chr7:99346675-99355848	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99339200-99352200	Weak transcription	Left Ventricle	heart
2	chr7:99346200-99350200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr7:99346400-99350400	Enhancers	HMEC	breast
4	chr7:99346600-99350200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr7:99346600-99350200	Enhancers	NHEK	skin
6	chr7:99346600-99350400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:99347800-99350400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:99348000-99350800	Enhancers	Fetal Intestine Small	intestine
9	chr7:99348000-99351000	Enhancers	Fetal Intestine Large	intestine
10	chr7:99348000-99351000	Enhancers	Stomach Mucosa	stomach
11	chr7:99348200-99351000	Enhancers	HepG2	liver
12	chr7:99348400-99350200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:99348400-99350200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr7:99348400-99350800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:99348600-99350200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:99349000-99350200	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr7:99349000-99350200	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr7:99349000-99350200	Enhancers	HSMM	muscle
19	chr7:99349000-99350400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr7:99349000-99350800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr7:99349400-99350200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr7:99349400-99350200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
23	chr7:99349600-99350200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr7:99349600-99350200	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr7:99349600-99350200	Enhancers	Colonic Mucosa	Colon
26	chr7:99349600-99350200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr7:99349600-99350200	Flanking Active TSS	Hela-S3	cervix
28	chr7:99349600-99350400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr7:99349600-99350400	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr7:99349600-99350800	Enhancers	Esophagus	oesophagus
31	chr7:99349600-99350800	Enhancers	Fetal Lung	lung
32	chr7:99349600-99350800	Enhancers	Pancreas	Pancrea
33	chr7:99349800-99350200	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr7:99349800-99350400	Weak transcription	Brain Germinal Matrix	brain
35	chr7:99350000-99350200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:99350000-99350200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:99350000-99350200	Flanking Active TSS	Duodenum Mucosa	Duodenum
38	chr7:99350000-99350200	Enhancers	Right Atrium	heart
39	chr7:99350000-99350200	Flanking Active TSS	K562	blood
40	chr7:99350000-99350400	Enhancers	A549	lung
41	chr7:99350000-99351000	Enhancers	Lung	lung
42	chr7:99350000-99355400	Weak transcription	Liver	Liver

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