Variant report

No.	Distal block	Cell Line	Cell type
1	chr1:209383099..209385008-chr1:209391993..209394631,2	MCF-7	breast:
2	chr1:209382422..209384753-chr1:209511940..209513719,2	MCF-7	breast:
3	chr1:209376128..209379505-chr1:209382757..209384972,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494918	0.85[EUR][1000 genomes]
rs17188002	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188009	0.82[EUR][1000 genomes]
rs17260224	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.82[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs1933613	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2800930	1.00[CEU][hapmap]
rs55933101	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56805778	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57720299	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59563227	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59871210	0.82[EUR][1000 genomes]
rs6657861	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73083997	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085905	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085915	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085916	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73085919	1.00[ASN][1000 genomes]
rs73085921	0.96[ASN][1000 genomes]
rs74155423	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74155426	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17188016	SNORD116-29	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209383400-209390200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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