Variant report

Variant	rs74155426
Chromosome Location	chr1:209393243-209393244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209391225..209393243-chr1:209555461..209557168,2	MCF-7	breast:
2	chr1:209389552..209391283-chr1:209392821..209394961,2	MCF-7	breast:
3	chr1:209388184..209391480-chr1:209391851..209395269,3	MCF-7	breast:
4	chr1:209383099..209385008-chr1:209391993..209394631,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10494918	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17188002	0.81[EUR][1000 genomes]
rs17188009	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17188016	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55933101	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56805778	0.83[EUR][1000 genomes]
rs57720299	0.81[EUR][1000 genomes]
rs59563227	0.81[EUR][1000 genomes]
rs59658508	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6671102	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73083997	0.81[EUR][1000 genomes]
rs73085905	0.81[EUR][1000 genomes]
rs73085915	0.90[EUR][1000 genomes]
rs73085916	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73085919	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73085921	0.82[AFR][1000 genomes]
rs73085926	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73085932	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs74155423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209391400-209394400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:209391600-209393400	Enhancers	NHEK	skin
3	chr1:209392000-209394200	Enhancers	HMEC	breast
4	chr1:209392200-209393400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:209392200-209394000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:209392200-209394400	Enhancers	Fetal Brain Male	brain
7	chr1:209392400-209393400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:209392800-209393800	Enhancers	Esophagus	oesophagus
9	chr1:209392800-209394200	Enhancers	Fetal Thymus	thymus
10	chr1:209392800-209394400	Flanking Active TSS	Dnd41	blood
11	chr1:209393200-209393400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr1:209393200-209393400	Flanking Active TSS	Brain Angular Gyrus	brain
13	chr1:209393200-209393400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
14	chr1:209393200-209393400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr1:209393200-209393400	Flanking Active TSS	Fetal Lung	lung
16	chr1:209393200-209393400	Flanking Active TSS	Stomach Smooth Muscle	stomach
17	chr1:209393200-209393400	Active TSS	HSMMtube	muscle
18	chr1:209393200-209393600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:209393200-209393600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr1:209393200-209393600	Enhancers	HSMM	muscle
21	chr1:209393200-209393800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr1:209393200-209393800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:209393200-209393800	Enhancers	Fetal Muscle Leg	muscle
24	chr1:209393200-209394000	Enhancers	Primary hematopoietic stem cells	blood
25	chr1:209393200-209394000	Active TSS	Brain Anterior Caudate	brain
26	chr1:209393200-209394000	Active TSS	Brain Hippocampus Middle	brain
27	chr1:209393200-209394000	Active TSS	Brain Substantia Nigra	brain
28	chr1:209393200-209394200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:209393200-209394200	Enhancers	Fetal Stomach	stomach
30	chr1:209393200-209394200	Enhancers	Thymus	Thymus

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