Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209388184..209391480-chr1:209391851..209395269,3	MCF-7	breast:
2	chr1:209389552..209391283-chr1:209392821..209394961,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10494918	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188002	0.83[EUR][1000 genomes]
rs17188009	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188016	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55933101	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56805778	0.85[EUR][1000 genomes]
rs57720299	0.83[EUR][1000 genomes]
rs59563227	0.83[EUR][1000 genomes]
rs59658508	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6657861	0.80[EUR][1000 genomes]
rs6671102	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73083997	0.83[EUR][1000 genomes]
rs73085905	0.83[EUR][1000 genomes]
rs73085915	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73085919	0.82[AFR][1000 genomes]
rs73085921	0.87[AFR][1000 genomes]
rs73085926	0.91[AFR][1000 genomes]
rs73085932	0.87[AFR][1000 genomes]
rs74155423	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74155426	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209383400-209390200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:209389200-209390200	Enhancers	Esophagus	oesophagus
3	chr1:209389400-209389600	Enhancers	Right Atrium	heart
4	chr1:209389400-209390200	ZNF genes & repeats	Aorta	Aorta
5	chr1:209389400-209392000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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