Variant report

Variant	rs73083997
Chromosome Location	chr1:209364177-209364178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494918	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17188002	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17188009	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17188016	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260224	0.96[ASN][1000 genomes]
rs1933613	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55933101	0.87[EUR][1000 genomes]
rs56805778	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57720299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59563227	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657861	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085905	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085915	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73085916	0.83[EUR][1000 genomes]
rs73085919	1.00[ASN][1000 genomes]
rs73085921	0.96[ASN][1000 genomes]
rs74155423	0.83[EUR][1000 genomes]
rs74155426	0.81[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209363600-209364400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr1:209363600-209364400	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr1:209363600-209364400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:209363600-209364600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:209363800-209364600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:209363800-209364600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:209363800-209364600	Enhancers	GM12878-XiMat	blood
8	chr1:209363800-209364800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:209363800-209364800	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr1:209364000-209364400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:209364000-209364400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:209364000-209364400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr1:209364000-209364400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:209364000-209364400	Enhancers	Pancreas	Pancrea
15	chr1:209364000-209364600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:209364000-209366200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:209364000-209366400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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