Variant report

Variant	rs73085921
Chromosome Location	chr1:209404552-209404553
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:209403276..209405119-chr1:209607404..209609101,2	MCF-7	breast:
2	chr1:209403047..209404912-chr1:209429099..209430969,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10494919	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1507333	0.85[EUR][1000 genomes]
rs17188002	0.96[ASN][1000 genomes]
rs17188016	0.96[ASN][1000 genomes]
rs17188030	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17260224	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17260245	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1933613	0.96[ASN][1000 genomes]
rs2055700	0.85[EUR][1000 genomes]
rs2800930	0.85[EUR][1000 genomes]
rs4504891	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56805778	0.96[ASN][1000 genomes]
rs57720299	0.96[ASN][1000 genomes]
rs59563227	0.96[ASN][1000 genomes]
rs59658508	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6657861	0.96[ASN][1000 genomes]
rs6661882	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6671102	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6681844	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6687960	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73083997	0.96[ASN][1000 genomes]
rs73085905	0.96[ASN][1000 genomes]
rs73085915	0.96[ASN][1000 genomes]
rs73085916	0.87[AFR][1000 genomes]
rs73085919	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73085926	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73085932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73085944	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73085950	0.83[EUR][1000 genomes]
rs74155423	0.82[AFR][1000 genomes]
rs74155426	0.82[AFR][1000 genomes]
rs7533402	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs906352	0.83[EUR][1000 genomes]
rs949488	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3439351	chr1:209404154-209406702	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209400800-209404800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:209404400-209409000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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